View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_80 (Length: 306)
Name: NF18243_high_80
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 39812911 - 39812630
Alignment:
| Q |
20 |
aatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtga |
119 |
Q |
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| T |
39812911 |
aatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtga |
39812812 |
T |
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| Q |
120 |
catgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacac |
219 |
Q |
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| T |
39812811 |
catgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacac |
39812712 |
T |
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| Q |
220 |
gcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttccaacctttgcttctccact |
301 |
Q |
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| T |
39812711 |
gcatccacgcgtgtcaaataagttcggcaatgttccggccacgagaaaaggtgtatattcttccaaccattgtttctgcact |
39812630 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 284
Target Start/End: Complemental strand, 15800825 - 15800635
Alignment:
| Q |
94 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
193 |
Q |
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||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||| || ||| || ||| ||| | | ||||||||||| |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
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| Q |
194 |
gccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttcca |
284 |
Q |
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| T |
15800725 |
gccattgtggatgcctcatcctgcaagccgcgactcgagtcaaataagtacgacagtgttcgggccacgagaataggtgtatattcttcca |
15800635 |
T |
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