View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_84 (Length: 293)
Name: NF18243_high_84
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 33116980 - 33116709
Alignment:
| Q |
14 |
acagcaacaattccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacac |
113 |
Q |
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| T |
33116980 |
acagcaacaattccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacac |
33116881 |
T |
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| Q |
114 |
ttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacag |
213 |
Q |
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| T |
33116880 |
ttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacag |
33116781 |
T |
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| Q |
214 |
tatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatct |
285 |
Q |
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| T |
33116780 |
tatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatct |
33116709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
70 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
169 |
Q |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
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| Q |
170 |
tttatgacccatggaacagtccccattccaggtgaaaagaa |
210 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 21491884 - 21492014
Alignment:
| Q |
80 |
gattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgaccc |
179 |
Q |
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||||||||||||| |||||| || | ||| || ||||||| || ||||||||||| | |||||||||||| || || || || |||||||| | |||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
180 |
atggaacagtccccattccaggtgaaaagaa |
210 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 21558479 - 21558574
Alignment:
| Q |
115 |
tgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
210 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaa |
21558574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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