View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_85 (Length: 292)
Name: NF18243_high_85
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_85 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 6436029 - 6435760
Alignment:
| Q |
7 |
ggagcagagataggaagggatgaagtatgagatgatgacgaaatatgcgccgcatcggacgggaaaggaagattaaggtggcagtgaatgcgggacaaag |
106 |
Q |
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| T |
6436029 |
ggagaagaaataggaagggatgaattatgagatgatgacgaaatacgcgccgcatcggacgggaaaggaagattaaggtggcagtgaatgcgggacaaag |
6435930 |
T |
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| Q |
107 |
ccattaatgtaggaagttcaatgttatgtctgtgactctgttctgttcagttttcagnnnnnnnnggtgaagaacaaacagctatcttatactatcttat |
206 |
Q |
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| T |
6435929 |
ccattaatgtaggaagttcaatgttatgtatgtgactctgttctgttcagttttcagttttttttggtgaagaacaaacagctatcttatactatcttat |
6435830 |
T |
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| Q |
207 |
agcatagcattgaaatgggatggtctaactagtttgtatgatgtcaaaaatattaaactaacgtataaat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6435829 |
agcatagcattgaaatgggatggtctaactagtttgtatgatgtcaaaaatattaaactaacgtataaat |
6435760 |
T |
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