View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_88 (Length: 286)
Name: NF18243_high_88
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_88 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 32847776 - 32848057
Alignment:
| Q |
1 |
tgccacgacggtggtggttctgaatgtctccagtaagttgttcttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgtt |
100 |
Q |
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| T |
32847776 |
tgccgcgacggtggtggttctgacggtctccagtaagtttttcttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgtt |
32847875 |
T |
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| Q |
101 |
ttcatttctaaaatatatctatctaatatttgcaggtattgtctatgtgttcattcagattttcatcatgagttatactactattattgcagtttctgtg |
200 |
Q |
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| T |
32847876 |
ttcatttctaaaatatatctatctaatatttgcaggtattgtctatgtgttcattcagattttcatcatgagttatactactattattgcagtttctgtg |
32847975 |
T |
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| Q |
201 |
agttcaatcaatctgttgttgaataatgaactttctataaatactctattttaatcattttgatttatctatctatctatct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32847976 |
agttcaatcaatctgttgttgaataatgaactttctataaatactctattttaatcattttgatttatctatctatctatct |
32848057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 32856607 - 32856695
Alignment:
| Q |
43 |
cttgatctacagttctataccgtgctgattttcacaatgagtttgagtgatttctgtttt-catttctaaaatatatctatctaatatt |
130 |
Q |
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||||||||||| || || || ||||||||||||| |||| | ||| ||||||||||||| |||||| || ||||||||||||||||| |
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| T |
32856607 |
cttgatctacacttatacactgtgctgattttcatgatgaatatgactgatttctgttttccatttcgaatgtatatctatctaatatt |
32856695 |
T |
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