View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_high_98 (Length: 270)
Name: NF18243_high_98
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_high_98 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 7560101 - 7560347
Alignment:
| Q |
11 |
atgaacacttgctgaaatttgagagagct---gaaaaccttacattcttcaaaacagatgtcttgaactatatttgaatttgtttactccgtcggatgca |
107 |
Q |
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| T |
7560101 |
atgaacacttgctgaaatttgagagagcttctgaaaaccttacattcttcaaaacagatgtcttgaaatatatttgaatttgtttactccgtcggatgca |
7560200 |
T |
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| Q |
108 |
gtgtttagtatattgttaaaactactgaattgatagtgtttactttttatctctgctacgattaacacttatcttgctaaccaatctatcttgtttttta |
207 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7560201 |
gtgtttactatattgttaaaactactgaattgatagtgtttactttttatctctgctaagattaacacttatcttgctaaccaatctatcttgtttttta |
7560300 |
T |
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| Q |
208 |
tgtatatataattaactttgtttcgacttcccaagttaccagaaagc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7560301 |
tgtatatataattaactttgtttcgacttcccaagttaccagcaagc |
7560347 |
T |
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