View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_10 (Length: 612)

Name: NF18243_low_10
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_10
NF18243_low_10
[»] chr4 (2 HSPs)
chr4 (425-552)||(52523827-52523954)
chr4 (27-72)||(6810287-6810332)
[»] chr8 (2 HSPs)
chr8 (413-527)||(22631356-22631470)
chr8 (424-525)||(2455810-2455909)
[»] chr7 (1 HSPs)
chr7 (422-527)||(43014634-43014740)
[»] chr3 (1 HSPs)
chr3 (413-490)||(36232916-36232994)
[»] chr6 (1 HSPs)
chr6 (425-526)||(33077632-33077734)
[»] scaffold0552 (1 HSPs)
scaffold0552 (27-72)||(3609-3654)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 425 - 552
Target Start/End: Complemental strand, 52523954 - 52523827
Alignment:
Q  425 cattgatttaatatttttctatgtgaatggcccagatttattacctattaatggtttaaactttttcttgccaattctataacaaaaaaggtgaccccac 524  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  52523954 cattgatttaatatttttctatgtggatggtccagatttattacatgttaatggtttaaactttttgttggcaattctataacaaaaaaggtgaccccac 52523855  T
Q  525 caataataatatttcattgatttccatt 552  Q
    ||||||||||||||||||||||| ||||    
T  52523854 caataataatatttcattgattttcatt 52523827  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 6810332 - 6810287
Alignment:
Q  27 cgaaacaaaataaccagcgtcttgttcgcagaaactgaagtacaca 72  Q
    |||||||||| || |||||||||  |||||||||||||||||||||    
T  6810332 cgaaacaaaagaagcagcgtctttgtcgcagaaactgaagtacaca 6810287  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 413 - 527
Target Start/End: Original strand, 22631356 - 22631470
Alignment:
Q  413 tttagtgacagccattgatttaatatttttctatgtgaatggcccagatttattacctattaatggttt-aaactttttcttgccaattctataacaaaa 511  Q
    |||| ||||| |||||||||||||||| || ||| || ||||||||||||||||| || |||||||||| ||||||||| ||| | ||| | ||| ||||    
T  22631356 tttaatgacaaccattgatttaatattattttatatggatggcccagatttattatctgttaatggtttgaaactttttgttgtctattgtgtaa-aaaa 22631454  T
Q  512 aaggtgaccccaccaa 527  Q
    ||| ||||||||||||    
T  22631455 aagttgaccccaccaa 22631470  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 525
Target Start/End: Original strand, 2455810 - 2455909
Alignment:
Q  424 ccattgatttaatatttttctatgtgaatggcccagatttattacctattaatggttt-aaactttttcttgccaattctataacaaaaaaggtgacccc 522  Q
    ||||| ||||||||||||| |||||| |||||||| |||| |||||| ||||| |||| |||||||||   | | ||| | ||||||||||| |||||||    
T  2455810 ccattaatttaatatttttttatgtggatggcccatatttgttacctgttaattgtttgaaacttttt---ggctattgtgtaacaaaaaagttgacccc 2455906  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 527
Target Start/End: Original strand, 43014634 - 43014740
Alignment:
Q  422 agccattgatttaatatttttctatgtgaatggcccagatttattacctattaatggttt-aaactttttcttgccaattctataacaaaaaaggtgacc 520  Q
    ||||||||||||||||||||| ||| || ||||| ||||| | |||| |  ||||||||| ||||||||| ||| | |||   ||||||||||| |||||    
T  43014634 agccattgatttaatatttttttatatggatggctcagatctgttacttggtaatggtttgaaactttttgttggctattgggtaacaaaaaagctgacc 43014733  T
Q  521 ccaccaa 527  Q
    |||||||    
T  43014734 ccaccaa 43014740  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 490
Target Start/End: Original strand, 36232916 - 36232994
Alignment:
Q  413 tttagtgacagccattgatttaatatttttctatgtgaatggcccagatttattacctattaatggttt-aaacttttt 490  Q
    |||| ||||| |||||||||||||||| || ||| || ||||||||||||||||  || |||||||||| |||||||||    
T  36232916 tttaatgacaaccattgatttaatattattttatatggatggcccagatttattttctgttaatggtttgaaacttttt 36232994  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 526
Target Start/End: Original strand, 33077632 - 33077734
Alignment:
Q  425 cattgatttaatatttttctatgtgaatggcccagatttattacctattaatggttt-aaactttttcttgccaattctataacaaaaaaggtgacccca 523  Q
    |||||||||||||||||| |||||| ||||    ||| ||||||||  ||||||||| ||||||||| ||| | ||| | ||||||||||  ||||||||    
T  33077632 cattgatttaatatttttttatgtggatggtttggatctattacctcataatggtttgaaactttttgttggctattgtgtaacaaaaaaactgacccca 33077731  T
Q  524 cca 526  Q
    |||    
T  33077732 cca 33077734  T

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Target: scaffold0552 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 3609 - 3654
Alignment:
Q  27 cgaaacaaaataaccagcgtcttgttcgcagaaactgaagtacaca 72  Q
    |||||||||| || |||||||||  |||||||||||||||||||||    
T  3609 cgaaacaaaagaagcagcgtctttgtcgcagaaactgaagtacaca 3654  T

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