View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_103 (Length: 267)
Name: NF18243_low_103
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_103 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 36926029 - 36926281
Alignment:
| Q |
15 |
atgaatattggtgttgatcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgag |
114 |
Q |
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| T |
36926029 |
atgaatattggtgttgatcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgag |
36926128 |
T |
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| Q |
115 |
gattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcgatca |
214 |
Q |
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| T |
36926129 |
gattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcaatca |
36926228 |
T |
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| Q |
215 |
agaaagactcggaacttcaattttggtggaaggaaataagggaagagggtcat |
267 |
Q |
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| T |
36926229 |
agaaagactcggaacttcaatcttggtggaaggaaataagggaagagggtcat |
36926281 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 46709523 - 46709328
Alignment:
| Q |
54 |
tttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgaggattacccttatgcagttgatggactggagatttggttt |
153 |
Q |
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| T |
46709523 |
tttcagaggaatggcaattaaagattcagcttctccgcatggccttcgactaatagtcaacgattacccttacgcggtggacgggctagagatttggttt |
46709424 |
T |
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| Q |
154 |
gccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcgatcaagaaagactcggaacttcaattttggtggaaggaa |
249 |
Q |
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| T |
46709423 |
gcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacacggtaaagaaagatgcagaactacaatcttggtggaaggaa |
46709328 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 6262522 - 6262441
Alignment:
| Q |
112 |
gaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttact |
193 |
Q |
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| T |
6262522 |
gaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatact |
6262441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 9606044 - 9606114
Alignment:
| Q |
109 |
atcgaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagacta |
179 |
Q |
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| T |
9606044 |
atcgaggactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagacta |
9606114 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 49608567 - 49608531
Alignment:
| Q |
145 |
atttggtttgccatcaagacatgggttaaagactact |
181 |
Q |
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| T |
49608567 |
atttggtttgccatcaagacatgggttgaggactact |
49608531 |
T |
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