View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_104 (Length: 267)
Name: NF18243_low_104
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5605736 - 5605487
Alignment:
| Q |
1 |
tacataatttgtaggtatatgtatattgtaattttatccaaaaatggatatatagcatagagccatattgaggcaaatcacataattaaattacctttta |
100 |
Q |
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| T |
5605736 |
tacataatttgtaggtatatgtatattgcaattttatccaaaaatggatatatagaatagagccatattgaggaaaatcacataattaaattacctttta |
5605637 |
T |
|
| Q |
101 |
ttgatttgtgatgggttggacccattttgattattatgctacaaaatcattccttttctatgaaaaaatatgtagttgaaatgaatgaatgagagttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5605636 |
ttgatttgtgatgggttggacccattttgattattatgctacaaaatcattccttttctatgaaaaaatatgtagttgaaatgaatgaatgaaagttaat |
5605537 |
T |
|
| Q |
201 |
aagacaacgctattggagaattgagttatagtccaagtggttctaattac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5605536 |
aagacaacgctattggagaattgagttatagtccaagtggttctaattac |
5605487 |
T |
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