View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_105 (Length: 265)
Name: NF18243_low_105
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_105 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 2049621 - 2049385
Alignment:
| Q |
25 |
tgtgtctaaacaagacgtagtgacttcacctaaataacacgtcgtgact-------ttatgctaaccaatgcttggtagaaacaatgctgtgagataaca |
117 |
Q |
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| T |
2049621 |
tgtgtctaaacaagacgtcgtgacttcacctaaaaaacatgtcgtgactcgtgacattatgctaaccaatgcttagtagaaacaatgctgtgagataaca |
2049522 |
T |
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| Q |
118 |
gcagtaaaagtagaatagcataaaaatataacaatccaaacataactcagttatttttaattccctaagcaaatggcgggcatctacaagtcatggcatt |
217 |
Q |
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| T |
2049521 |
gcagtaaaagtagaatagcataaaaatataacaatccaaacataactcagtt-tttttaattccctaagcaaatggcgggcatctacaagtcatggcatg |
2049423 |
T |
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| Q |
218 |
ttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
2049422 |
ttcaaaataacaaaattgtaaacaacatttgacctttg |
2049385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 2059728 - 2059645
Alignment:
| Q |
171 |
tttttaattccctaagcaaatggcgggcatctacaagtcatggcattttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
2059728 |
tttttaaatccctaagcaaatggtgg-catctacaaatagtggcatattcaaattaacaatattgtaaacaacatttaacctttg |
2059645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 2103533 - 2103486
Alignment:
| Q |
208 |
tcatggcattttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
2103533 |
tcatggcatgttcaaattgacaaaattgtaaacaacattcgacctttg |
2103486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 2055534 - 2055485
Alignment:
| Q |
205 |
aagtcatggcattttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
2055534 |
aagtcatggcatgttcaaatta-caaaattgtaaacaacaattgacctttg |
2055485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 2042813 - 2042757
Alignment:
| Q |
199 |
atctacaagtcatggcattttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
2042813 |
atctacaagtcgtggcacgtacaaattgatgaaattgtaaacaacatttgacctttg |
2042757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 39182164 - 39182211
Alignment:
| Q |
208 |
tcatggcattttcaaattaacaaaattgtaaacaacatttgacctttg |
255 |
Q |
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| T |
39182164 |
tcatggcatgttcaaattgacaaaattgtaaacaacatttgacttttg |
39182211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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