View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_108 (Length: 261)
Name: NF18243_low_108
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_108 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 10253 - 10011
Alignment:
| Q |
18 |
agaacgatggtgttcctttcaagtgaatattgtaatagaggaatgattgttagaacttgttctgaaccatatataacacaactcatacctatattgatca |
117 |
Q |
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| T |
10253 |
agaacgatggtggtcctttaaagtgaatattgtaatagaggaatgattgttggaacttgttcagaaccatatataacacaactcatacctatattgatca |
10154 |
T |
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| Q |
118 |
ttgttattgtaaaattgggtcaatggttgtacttgtaaaaagggtttat-agtttagttgaaccattgttatgtaatatatcaaattgaatcaatgaaag |
216 |
Q |
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| T |
10153 |
ttgttattgtaaaattgggtcaatggttgtacttgtaaaaagggtttatgagtttagttgaaccattgttatgtaatatatcaaattgaatcaatgaaag |
10054 |
T |
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| Q |
217 |
aatatttcattgttgctgcaaactgtttactatatcacctttg |
259 |
Q |
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| T |
10053 |
aatatttcattgttgctgcaaactgtttactatatcacctttg |
10011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 52166251 - 52166048
Alignment:
| Q |
18 |
agaacgatggtgttcctttcaagtgaatattgtaatagaggaatgattgttagaacttgttctgaaccatatataacacaactcatacctatattgatca |
117 |
Q |
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| T |
52166251 |
agaaggatgatgttcttttcaagtgaatattgtaataaaggaatgattgttagaacttgttctgaaccatatataacacaactca-------------ca |
52166165 |
T |
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| Q |
118 |
ttgttattgtaaaattgggtcaatggttgtacttgtaaaaagggtttat-agtttagttgaaccattgttatgtaatatatcaaattgaatcaatgaaag |
216 |
Q |
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| T |
52166164 |
ttattattgtaaaattgggtcaatggttgtatttgtaaaaggggtttatgagtttatttgaaccactgata------atatcaaattgaatcaatgaaaa |
52166071 |
T |
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| Q |
217 |
aatatttcattgttgctgcaaac |
239 |
Q |
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| T |
52166070 |
aatgtttcattgttgctgcaaac |
52166048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 55207373 - 55207518
Alignment:
| Q |
86 |
atatataacacaactcatacctatattgatcattgttattgtaaaattgggtcaatggttgtacttgtaaaaagggtttat-agtttagttgaaccattg |
184 |
Q |
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| T |
55207373 |
atatataacacaactcacacctatattgatcattgttattgtaaaattaggtcaacggttgtacttgt-aaaggggtttataagtttatttgaaccactg |
55207471 |
T |
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| Q |
185 |
ttatgtaat-atatcaaattgaatcaatgaaagaatatttcattgtt |
230 |
Q |
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| T |
55207472 |
ttatgtaatcacatcaaattgaattaatgaaaaaatgtttcattgtt |
55207518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 30109370 - 30109298
Alignment:
| Q |
125 |
tgtaaaattgggtcaatggttgtacttgtaaaaagggtttat-agtttagttga-accattgttatgtaatat |
195 |
Q |
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| T |
30109370 |
tgtaaaattgggtcaatggttatacttgtaaaaggggtttatgagtttatttgagaccactgttatgtaatat |
30109298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 41782504 - 41782412
Alignment:
| Q |
149 |
cttgtaaaaagggtttat-agtttagttgaaccattgttatgtaata-tatcaaattgaatcaatgaaagaatatttcattgttgctgcaaac |
239 |
Q |
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| T |
41782504 |
cttgtaaaaggggtttatgagtttatttcaaccactgttatgtaataatatcaaattgaatcagtgaaaaaatgttttattgttgctgcaaac |
41782412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 951112 - 951154
Alignment:
| Q |
30 |
ttcctttcaagtgaatattgtaatagaggaatgattgttagaa |
72 |
Q |
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| T |
951112 |
ttcctttcaagtgaatattgtaatagaggaatgattgttagaa |
951154 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 49198529 - 49198488
Alignment:
| Q |
107 |
tatattgatcattgttattgtaaaattgggtcaatggttgta |
148 |
Q |
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| T |
49198529 |
tatattgatcattgcgattgtaaaattgagtcaatggttgta |
49198488 |
T |
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