View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_11 (Length: 575)
Name: NF18243_low_11
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 20368278 - 20368836
Alignment:
| Q |
1 |
agtgtgttacttgtggccctaacaagtcttttgaagatttttcagatatttacgctctcattatgaaaacttataactcatataatgttaatttacgttt |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20368278 |
agtgtgttacttgtggcccaaacaagtcttttgaagatttttcagatatttacgccctcattatgaaaacttataactcatataatgttaatttacgttt |
20368377 |
T |
|
| Q |
101 |
tgatcatttgggattnnnnnnnctttgtgtcccttaatgtgctggaatcactcaaaggcttatcattctgtatatgatgatgatgcagaagaaaatcagg |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20368378 |
tgatcatttgggattaaaaaaactttgtgtcccttaatgtgttggaatcacttaaaggcttatcattatgtatatgatgatgatgcagaagaaaatcagg |
20368477 |
T |
|
| Q |
201 |
atgatctatcgacggaaaatcaaagacactgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaacactttaagatggaa |
300 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20368478 |
atgatctatcgatggaaaatcaaagacactggttaaatttgatgggaccatatctggcttgaaggagccgatgcggctaggtgaacactttaagatggaa |
20368577 |
T |
|
| Q |
301 |
aatcacagacgctaggaccgagctcgtgtgcactcccaaacattg-gaaaggataatgagaacaatagaaaccttgtgaaggtttatgagnnnnnnngga |
399 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
20368578 |
aatcacagacgctaggaccgagctcgtgtgcactctcaaacattgagaaaggataatgagaacaataaaaaccttgtgaaggtttatgag-aaaaaagga |
20368676 |
T |
|
| Q |
400 |
gataaaagg-nnnnnnngtttcttcataaaccttttcacaatgtttgtattgttttcatcatcctttcctaatatttcggaccggacacaagctcaatct |
498 |
Q |
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| T |
20368677 |
gataaaaggttttttttgtttcttcataaaccttttcacaaggtttgtattgttttcatcatcctttcctaatgtttgggactggacacaagctcagtct |
20368776 |
T |
|
| Q |
499 |
ttgcatctataattttccatcttaaagggtttaataaactgtatggcctcctcaaagcct |
558 |
Q |
| |
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||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
20368777 |
ttgtatctatagttttccatcttaaagggtttaacaaaccgtatggcctcctcaaagcct |
20368836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 20368771 - 20368711
Alignment:
| Q |
320 |
gagctcgtgtgcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaa |
379 |
Q |
| |
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||||| |||| || ||||||||||| ||||||||| |||| ||||||| |||||||||||| |
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| T |
20368771 |
gagcttgtgtccagtcccaaacattaggaaaggatgatgaaaacaatacaaaccttgtgaa |
20368711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 230 - 389
Target Start/End: Complemental strand, 46951420 - 46951260
Alignment:
| Q |
230 |
tgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgt |
329 |
Q |
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|||||||||||||||| | | ||| |||||| ||||| | |||||||| |||||||||||||||| |||||||||| | ||| ||||| | | ||| || |
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| T |
46951420 |
tgattaaatttgctggtgacaaatcaggcttggaggaggccatgcggcttggtgaacactttaagaaggaaaatcacggccgcaaggactgggttcgcgt |
46951321 |
T |
|
| Q |
330 |
gcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaaggtttatgag |
389 |
Q |
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||| |||||||||| |||||||| |||||||| || ||||||||||||| || ||||| |
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| T |
46951320 |
gcaggcccaaacattaggaaaggacaatgagaataacccaaaccttgtgaagtttgatgag |
46951260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 46956131 - 46956050
Alignment:
| Q |
34 |
aagatttttcagatatttacgctctcattatgaaaacttataactcatataatgttaatttacgttttgatcatttgggatt |
115 |
Q |
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|||||||||||||||| | |||||||||||| | || | |||||| |||||| | |||||||| ||||||||||||||| |
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| T |
46956131 |
aagatttttcagatatacatgctctcattatgcatacgttcaactcagataatgctgatttacgtgctgatcatttgggatt |
46956050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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