View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_112 (Length: 251)
Name: NF18243_low_112
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_112 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3879237 - 3879475
Alignment:
| Q |
1 |
ttctgcatcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtatta |
100 |
Q |
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| T |
3879237 |
ttctgcatcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtatta |
3879336 |
T |
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| Q |
101 |
cgattaatacattttatccccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaata |
200 |
Q |
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| T |
3879337 |
cgattaatacatttaaccaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaata |
3879436 |
T |
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| Q |
201 |
ttagattggcgtactgtcgcaagtatgtttctgcttcat |
239 |
Q |
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| T |
3879437 |
ttagattggcgtactgtcgcaagtatgtttctgcttcat |
3879475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3865257 - 3865493
Alignment:
| Q |
1 |
ttctgcatcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtatta |
100 |
Q |
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|||||| ||||||||||| |||||||| || |||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
3865257 |
ttctgcgtcaatggctgcaatagctcacagttctatgttggaggtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtatta |
3865356 |
T |
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| Q |
101 |
cgattaatacattttatccccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaata |
200 |
Q |
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| T |
3865357 |
ggacgagtacatgacataact--gccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaata |
3865454 |
T |
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| Q |
201 |
ttagattggcgtactgtcgcaagtatgtttctgcttcat |
239 |
Q |
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| T |
3865455 |
ttagattggtgtactgtcgcaagtatgtttctgcttcat |
3865493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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