View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_113 (Length: 250)
Name: NF18243_low_113
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_113 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 33607208 - 33607306
Alignment:
| Q |
145 |
gtcctagacggttgactctcctgcccaaacttaaggccacctatgtggagtggctggttgttgctttgtgtggggatttgccactatcaatattcttcg |
243 |
Q |
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| T |
33607208 |
gtcctagacggctgactctcctgcccaaacttaaggccgcctatgttgaggggttggctattgctttgtgtggggatttgccactatcaatatttttcg |
33607306 |
T |
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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33607068 - 33607124
Alignment:
| Q |
1 |
caaaaggttcattcataactaattaaggttctttaaaaaatattttcaatagaatta |
57 |
Q |
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| T |
33607068 |
caaaaggttcattcataactaattaaggttttttaaaaaatattttcaatagaatta |
33607124 |
T |
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