View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_114 (Length: 250)
Name: NF18243_low_114
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 39210245 - 39210040
Alignment:
| Q |
3 |
gtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattctacactcac |
102 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
39210245 |
gtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattctacactcac |
39210146 |
T |
|
| Q |
103 |
aacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39210145 |
aacattggaatctaatctattcatattcaaattagttc----------------aaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatca |
39210062 |
T |
|
| Q |
203 |
acttcccttgtattttcaaggt |
224 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39210061 |
acttcccttgtattttcaaggt |
39210040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
| Q |
83 |
aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca |
181 |
Q |
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||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
24036791 |
aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca |
24036889 |
T |
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| Q |
182 |
----ggcttgcagatagtttcatcaacttcccttgtat |
215 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
24036890 |
ggatggcttgcagatagtttcatcaacttagcttgtat |
24036927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 83 - 242
Target Start/End: Original strand, 27513624 - 27513783
Alignment:
| Q |
83 |
aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag |
182 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27513624 |
aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag |
27513723 |
T |
|
| Q |
183 |
gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcatctc |
242 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27513724 |
gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc |
27513783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
| Q |
124 |
catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g |
222 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||| |
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|
| T |
8675245 |
catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc |
8675146 |
T |
|
| Q |
223 |
gtcttcggcaccttcatctc |
242 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
8675145 |
gtcttcggcaccttcttctc |
8675126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 27510745 - 27510799
Alignment:
| Q |
3 |
gtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27510745 |
gtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt |
27510799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
| Q |
112 |
atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca |
202 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9461298 |
atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca |
9461199 |
T |
|
| Q |
203 |
acttcccttgtattttcaa |
221 |
Q |
| |
|
|||||| | ||||||||| |
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|
| T |
9461198 |
acttccttcttattttcaa |
9461180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
| Q |
93 |
ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt |
186 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
38950770 |
ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt |
38950866 |
T |
|
| Q |
187 |
gcagatagtttcatcaact |
205 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
38950867 |
gcagatagtttcatcaact |
38950885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
| Q |
157 |
aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
18331979 |
aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc |
18332031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
| Q |
88 |
atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt |
155 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
18331878 |
atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt |
18331945 |
T |
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