View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_116 (Length: 250)
Name: NF18243_low_116
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_116 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 22858597 - 22858357
Alignment:
| Q |
13 |
atgaaacaaaccggcaacaactatttgaatcgtaacagtaactggaacgtagcgtgttaaatttgacggaaacataaacgaaaaaaggttcgttcccgaa |
112 |
Q |
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| T |
22858597 |
atgaaacaaaccggcaacaactatttgaatcgtaacagtaactggaacgtagcgtgttaaatttgacggaaacataaacgaaaaaaggttcgttcccgaa |
22858498 |
T |
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| Q |
113 |
ctcggaatcttc---cttcttcagcgttaccatcatctctttcttctcttcaagccaagaatatttgtagcacactccaattacctatttcttctatcat |
209 |
Q |
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|||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22858497 |
ctcggaatcttcttccttcttcggcgtcaccatcatcgctttcttctcttcaagccaagaatatttgtagcacactccaattacctatttcttctatcat |
22858398 |
T |
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| Q |
210 |
cgattcttcattcttccatttccctctcagatctacgctaa |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22858397 |
cgattcttcattcttccatttccctctcagatctacgctaa |
22858357 |
T |
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