View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_12 (Length: 573)
Name: NF18243_low_12
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 154 - 331
Target Start/End: Original strand, 15627500 - 15627670
Alignment:
| Q |
154 |
taagcttccattagccgtgacatcgtaaacaagtaggaggtcgcctttacagtgacaccacccaagtaacggaaccaaattccagtggcgaagctggcct |
253 |
Q |
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| T |
15627500 |
taagcttccattagccatgaagtcatacacaagtagcaggtcgcctttgcagcgacaccatccaagtagctgaactaaattcctgtgacgaagccggcct |
15627599 |
T |
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| Q |
254 |
atggtggtgatttcagaattcagacacaaattcccccagcttttgttttgattcacgtgaaattttcttaacagctac |
331 |
Q |
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| T |
15627600 |
atgctggcgat-------ttcagacacgaattccctaagcccttgttttgattcatgtgaaaatctcttaacagctac |
15627670 |
T |
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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 22934166 - 22934064
Alignment:
| Q |
154 |
taagcttccattagccgtgacatcgtaaacaagtaggaggtcgcctttacagtgacaccacccaagtaacggaaccaaattccagtggcgaagctggcct |
253 |
Q |
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| T |
22934166 |
taagcttccatttgacatgaaatcgtacacaagtaggaggtcgcctctgcggcgacaccacccaagtaactgaaccaaattccgatggcgaagccggcct |
22934067 |
T |
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| Q |
254 |
atg |
256 |
Q |
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| T |
22934066 |
atg |
22934064 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 16861901 - 16861859
Alignment:
| Q |
15 |
aatatagtcattgaggttcataggaaactcttgtatcaatgct |
57 |
Q |
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| T |
16861901 |
aatatagtcattgaggttcataggaaactcttctatcaatgct |
16861859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 7284868 - 7284944
Alignment:
| Q |
63 |
gaggtttagcctgtcaattttacataac---tgagcttatgcaaaaatatgacgtgctaaataaggaataattaagg |
136 |
Q |
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| T |
7284868 |
gaggtttagcctgccaatgttacataaccaatgagcctatgcggaaatttgaagtgctaaataaagaataattaagg |
7284944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 527
Target Start/End: Original strand, 48019365 - 48019426
Alignment:
| Q |
466 |
atgagcagtataaccaatgcagggaaatcaatttcaatacaatctgccaactgcaggaatca |
527 |
Q |
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| T |
48019365 |
atgaccagaataaccaatgcaggaagaccaatctcaacacaatctgccaactacaggaatca |
48019426 |
T |
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