View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_124 (Length: 239)
Name: NF18243_low_124
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_124 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 54618670 - 54618447
Alignment:
| Q |
1 |
tattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttactagttaagctacacaaagattgtgttaataaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618670 |
tattaagggactgaaacatctaccacttatgtccaccatatgtttgttaatcgattataacttactagttaagctacacaaagattgtgttaataaatat |
54618571 |
T |
|
| Q |
101 |
cgatctgtgttttgcattttaacatatgtatatctaatttgaatgtgtaaaagaaaggagaatggagttaagatgtattgatatgattttatttatatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54618570 |
cgatctgtgttttgcattttaacatatgtatatctaatttgaatgtgtaaaagaaatgagaatgaagttaagatgtattgatatgattttatttatatta |
54618471 |
T |
|
| Q |
201 |
aggagaagtatacagacaattaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
54618470 |
aggagaagtatacagacaattaat |
54618447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University