View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_128 (Length: 238)
Name: NF18243_low_128
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_128 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 33606943 - 33606728
Alignment:
| Q |
6 |
agatgtactcacatgtatcatgccttttaatttctcaaatataagataagattcttttcatatcattaaataacttatgtatctggtatataatatataa |
105 |
Q |
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| T |
33606943 |
agatgtacttacaagtatcatgtcttttaatttctcaaatataagataagattcttttcatatcattgaataacttatgtatccggtatataatatataa |
33606844 |
T |
|
| Q |
106 |
actaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttagaatcaaaatgctattcaactaatctgaaaaagaattttctctt |
205 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
33606843 |
actaaatacataagttattcaattaatctaaagaa-aaaaaattctcttatatttagaatcaaaacgcttttcaattaatctgaaaaagaattttctctt |
33606745 |
T |
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| Q |
206 |
atatttagagccgaaac |
222 |
Q |
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||||||||||||||||| |
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| T |
33606744 |
atatttagagccgaaac |
33606728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 19137491 - 19137424
Alignment:
| Q |
94 |
tataatatataaactaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttag |
162 |
Q |
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| T |
19137491 |
tatactatataaactaaatacatcgtttattcaatgaacctaaa-aagaaaaatttctcttatatttag |
19137424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 13514348 - 13514415
Alignment:
| Q |
94 |
tataatatataaactaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttag |
162 |
Q |
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| T |
13514348 |
tatactatataaactaaatacatcatttattcaatgaa-cttaaaaataaaaatttctcttatatttag |
13514415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 13611233 - 13611300
Alignment:
| Q |
94 |
tataatatataaactaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttag |
162 |
Q |
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|||| |||||||||||||||||| | ||||||||| || || || || ||||| ||||||||||||||| |
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| T |
13611233 |
tatactatataaactaaatacatcatttattcaatgaa-cttaaaaataaaaatttctcttatatttag |
13611300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 13685677 - 13685744
Alignment:
| Q |
94 |
tataatatataaactaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttag |
162 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||||| || ||||| || ||||| ||||||||||||||| |
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|
| T |
13685677 |
tatactatataaactaaatatatcatttattcaatgaacctaaa-aataaaaatttctcttatatttag |
13685744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 37624334 - 37624371
Alignment:
| Q |
100 |
atataaactaaatacattagttattcaattaatctaaa |
137 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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|
| T |
37624334 |
atataaactaaatacattagttattcaaagaatctaaa |
37624371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 35985338 - 35985366
Alignment:
| Q |
109 |
aaatacattagttattcaattaatctaaa |
137 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
35985338 |
aaatacattagttattcaattaatctaaa |
35985366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 36006746 - 36006774
Alignment:
| Q |
109 |
aaatacattagttattcaattaatctaaa |
137 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
36006746 |
aaatacattagttattcaattaatctaaa |
36006774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 31867226 - 31867290
Alignment:
| Q |
101 |
tataaactaaatacattagttattcaattaatctaaagaagaaaaaattctcttatatttagaatc |
166 |
Q |
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|
|||||||||||||||||| | ||||||| |||||||| || |||| ||||| ||||||||||||| |
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| T |
31867226 |
tataaactaaatacattattaattcaataaatctaaa-aataaaatcttctcctatatttagaatc |
31867290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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