View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_13 (Length: 556)

Name: NF18243_low_13
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_13
NF18243_low_13
[»] chr1 (1 HSPs)
chr1 (11-540)||(36926283-36926812)
[»] chr3 (3 HSPs)
chr3 (73-308)||(49608226-49608461)
chr3 (372-452)||(49608103-49608184)
chr3 (11-47)||(49608458-49608494)
[»] chr2 (3 HSPs)
chr2 (175-309)||(386538-386672)
chr2 (292-392)||(42691910-42692010)
chr2 (72-132)||(42692170-42692230)
[»] chr7 (1 HSPs)
chr7 (16-343)||(46708976-46709303)
[»] chr8 (6 HSPs)
chr8 (11-143)||(6262233-6262365)
chr8 (79-143)||(6456147-6456211)
chr8 (85-143)||(6362116-6362174)
chr8 (62-143)||(6330783-6330864)
chr8 (83-143)||(6351231-6351291)
chr8 (83-143)||(6423148-6423208)


Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 36926283 - 36926812
Alignment:
Q  11 gtgagaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926283 gtgacaagaaagatgagccttggtggccaaagatgcatactctcgaagagctgattgaaacttgcactattattatatggattgcttcagctctccatgc 36926382  T
Q  111 tgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926383 tgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaat 36926482  T
Q  211 gaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36926483 gaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatg 36926582  T
Q  311 ctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagtttggcaataaacttgttga 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36926583 ctagtgatgaggtctaccttggacagagagacactccagattggacttctgacataaaggcattggaggcttttgagaagtttggcaataagcttgttga 36926682  T
Q  411 aattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgccatacactttgcttaaacctactagtgaa 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36926683 aattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgtcatacactttgcttaaacctactagtgaa 36926782  T
Q  511 ggtggactaactggtatggggattcctaat 540  Q
    ||||||||||||||||||||||||||||||    
T  36926783 ggtggactaactggtatggggattcctaat 36926812  T

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Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 73 - 308
Target Start/End: Complemental strand, 49608461 - 49608226
Alignment:
Q  73 tgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagcc 172  Q
    ||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||| ||||||||||||||||||||||| ||  || || || |||| |    
T  49608461 tgcactattattatatggattgcttcaactctccatgttgttgtcaactttggacattatccatatggaggctatccaccaagcagttctactctgagtc 49608362  T
Q  173 gacgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgt 272  Q
    |  ||||||||||||||||| | |||||||| |||||| ||||| ||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||    
T  49608361 ggtgactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacagtttcaagctgt 49608262  T
Q  273 tcttggtctttcacttgtggaaatattgtctaggca 308  Q
    |||||   |||||||| || |||| |||||| ||||    
T  49608261 tcttgacatttcacttttgaaaatcttgtctgggca 49608226  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 372 - 452
Target Start/End: Complemental strand, 49608184 - 49608103
Alignment:
Q  372 attggaggctttt-gagaagtttggcaataaacttgttgaaattgagaaaaggattgggataatgaacaatgatgagaaact 452  Q
    ||||||||||||| |||||||||| |||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||    
T  49608184 attggaggctttttgagaagtttgacaataaacttgcagaaattgagaaaaggattgtgataatgaacaatgatgaaaaact 49608103  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 49608494 - 49608458
Alignment:
Q  11 gtgagaagaaagatgagccttggtggccaaagatgca 47  Q
    |||| ||||||||||||||||||||||||||||||||    
T  49608494 gtgacaagaaagatgagccttggtggccaaagatgca 49608458  T

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Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 386538 - 386672
Alignment:
Q  175 cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttc 274  Q
    |||||||||||||||| |||||||||||| ||||| ||||||  |||||||||| |||| |||||| | |||||||| ||||||||||||||||||||||    
T  386538 cgactcatgcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttc 386637  T
Q  275 ttggtctttcacttgtggaaatattgtctaggcat 309  Q
    |||| |||||| ||||| |||| ||||||||||||    
T  386638 ttggcctttcaattgtgaaaatcttgtctaggcat 386672  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 42692010 - 42691910
Alignment:
Q  292 gaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagt 391  Q
    ||||||||||| ||||| |||  |||||| || ||||||||| ||||||||| |||| | ||||| || || | || |||||| ||||| ||| ||||||    
T  42692010 gaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagacaatccaaactggacatcagatacaagggcattagaggcctttaagaagt 42691911  T
Q  392 t 392  Q
    |    
T  42691910 t 42691910  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 42692230 - 42692170
Alignment:
Q  72 ttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtat 132  Q
    |||||||| | | |||||||||||||||||||| ||||| || || || ||||||||||||    
T  42692230 ttgcactactgtcatatggattgcttcagctcttcatgcagctgttaattttggacagtat 42692170  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 46709303 - 46708976
Alignment:
Q  16 aagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgctgcag 115  Q
    |||||| | ||||||||||||||||||||||| ||  |  ||||  |||  ||||| ||||| || ||||||||||||||||||||||| ||||| || |    
T  46709303 aagaaaaacgagccttggtggccaaagatgcaaacagtggaagagttgacggaaacatgcacaatcattatatggattgcttcagctctacatgcagctg 46709204  T
Q  116 tcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaact 215  Q
    | ||||||||||| ||||| | || ||| ||  |||| |  |||||  | || || || ||| |||||||||| |||||||||  ||||||  |||||||    
T  46709203 taaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcctgagaaaggaactatagagtatgatgaact 46709104  T
Q  216 tttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcatgctagt 315  Q
    | ||  ||||||||| ||||||||| |||||||||||||  |||| || ||  || || ||||  |||| ||| | ||||| |||||||  ||| ||  |    
T  46709103 tgtgacaaatcctgataaagcttttttgaaaacaatcacggcacaattgcagactcttgttggcatttcgcttatagaaattttgtctacacattcttct 46709004  T
Q  316 gatgaggtctaccttggacagagagaca 343  Q
    |||||||||||||||||||| |||||||    
T  46709003 gatgaggtctaccttggacaaagagaca 46708976  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 6262365 - 6262233
Alignment:
Q  11 gtgagaagaaagatgagccttggtggccaaagatgcatactctcaaagatctgattgaaacttgcactattattatatggattgcttcagctctccatgc 110  Q
    |||| |||||||| ||||| |||||||| || ||||| |||| | ||||  ||||| ||  ||||| |||||| ||||||| |||||||||||| |||||    
T  6262365 gtgacaagaaagacgagccatggtggccgaaaatgcaaactcgcgaagagttgattcaagtttgcagtattatcatatggactgcttcagctcttcatgc 6262266  T
Q  111 tgcagtcaactttggacagtatccatatggagg 143  Q
     || || || |||||||| ||||| ||||||||    
T  6262265 agctgttaattttggacaatatccgtatggagg 6262233  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 6456211 - 6456147
Alignment:
Q  79 attattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 143  Q
    ||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  6456211 attatcatatggactgcttcagctcttcatgcagcagttaactttggacagtatccttatggagg 6456147  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 6362174 - 6362116
Alignment:
Q  85 atatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 143  Q
    ||||||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||    
T  6362174 atatggattgcttcagcacttcatgcagcagttaattttggacaatatccgtatggagg 6362116  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 6330864 - 6330783
Alignment:
Q  62 tgattgaaacttgcactattattatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 143  Q
    |||||||| ||||||||||  | ||||||||||||||||| |  ||||| || || || ||||| || ||||||||||||||    
T  6330864 tgattgaagcttgcactatcctcatatggattgcttcagcacatcatgcagctgttaattttggtcaatatccatatggagg 6330783  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 6351291 - 6351231
Alignment:
Q  83 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 143  Q
    ||||||||||||||||||| || ||||| || || || || ||||| ||||||||||||||    
T  6351291 ttatatggattgcttcagcacttcatgcagctgttaatttcggacaatatccatatggagg 6351231  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 6423208 - 6423148
Alignment:
Q  83 ttatatggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggagg 143  Q
    ||||||||||||||||||| || ||||| || || || |||||||| || |||||||||||    
T  6423208 ttatatggattgcttcagcacttcatgcagctgttaattttggacaatacccatatggagg 6423148  T

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