View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_132 (Length: 229)
Name: NF18243_low_132
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_132 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 27996967 - 27996786
Alignment:
| Q |
19 |
gattgtaggtcaaaaataacataaaactatcccttcttaatgagtgaaaaaagaaaagaacttgaagaaaatgtgaagtttcccacactnnnnnnnnnnt |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |
|
|
| T |
27996967 |
gattctaggtcaaaaataacataaaactatcccttcttaatgagtgaaaaaagaaaagaacttaaagaaaatgtgaagtttcccccactaaaaaaaatat |
27996868 |
T |
|
| Q |
119 |
ccctggtgcatgcaaagataaactttgagaaaatattcatttatttattgtcaaatcattaatattatgaatagggtcttgttaac |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27996867 |
ccctgg----tgcaaagataaactttgagaaaatattcatttatttattgtcaaatcattaatattatgaatagggtcttgttaac |
27996786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 44312007 - 44312073
Alignment:
| Q |
19 |
gattgtaggtcaaaaataacataaaactatcccttcttaatgagtgaaaaaagaaaagaacttgaaga |
86 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
44312007 |
gattataggtcaaaaatgacttaaaactatccctcctcaatgagtg-aagaagaagagaacttgaaga |
44312073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 20227494 - 20227560
Alignment:
| Q |
19 |
gattgtaggtcaaaaataacataaaactatcccttcttaatgagtgaaaaaagaaaagaacttgaaga |
86 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
20227494 |
gattataggtcaaaaatgacttaaaactatccctcctcaatgagtg-aagaagaagagaacttgaaga |
20227560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University