View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_133 (Length: 229)
Name: NF18243_low_133
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_133 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 25880063 - 25880171
Alignment:
| Q |
107 |
aattaacataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaattgtacgatctgcaaag |
206 |
Q |
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| T |
25880063 |
aattaacataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaattgtacgatctgcaaag |
25880162 |
T |
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| Q |
207 |
tcctctctg |
215 |
Q |
| |
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||||||||| |
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| T |
25880163 |
tcctctctg |
25880171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 25879994 - 25880049
Alignment:
| Q |
69 |
tattattgttattttctcatgaacacatatagatacataattaacataaacatacc |
124 |
Q |
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| T |
25879994 |
tattattgttattttttcatgaacacatagagatacataattaacaaaaacatacc |
25880049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 14312956 - 14313061
Alignment:
| Q |
110 |
taacataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaattgtacgatctgcaaagtcc |
209 |
Q |
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| T |
14312956 |
taacataaagatacctgcatctatgaccaaaaccctgtcacaatccataactgttggtattctgtgagcaatgctaataattgtacgatctgcaaaatcc |
14313055 |
T |
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| Q |
210 |
tctctg |
215 |
Q |
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|||||| |
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| T |
14313056 |
tctctg |
14313061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 14296928 - 14297030
Alignment:
| Q |
113 |
cataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaattgtacgatctgcaaagtcctct |
212 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||| ||| |
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| T |
14296928 |
cataaacataccttcatctatgaccaaaaccttgtcacaatccataactgttggtattctatgagcaatgctaatgattgtacgatccgcaaagtcttct |
14297027 |
T |
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| Q |
213 |
ctg |
215 |
Q |
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||| |
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| T |
14297028 |
ctg |
14297030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 14274980 - 14275102
Alignment:
| Q |
81 |
tttctcatgaacacatatagatacataattaacataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaa |
180 |
Q |
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|||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||| |||||||||| |
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| T |
14274980 |
tttctcatgaacacatatggatatataa----cataaacataccttcatctatgaccaaaaccctatcacagtccataactgtaggtatcctgtgagcaa |
14275075 |
T |
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| Q |
181 |
tgctaacaattgtacgatctgcaaagt |
207 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
14275076 |
tgctaatgattgtacgatctgcaaagt |
14275102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 14307256 - 14307377
Alignment:
| Q |
90 |
aacacatatagatacataattaacataaacatacctgcatctatgaccaaaaccttgtcacaatccataactgtaggtattctgtgagcaatgctaacaa |
189 |
Q |
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|||||||||| ||| ||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| |||||| |
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| T |
14307256 |
aacacatataaatagatatataacataaacatgcctgcatctatgaccaaaaccctgtcacagtccataactgtttgtattctgtgaacaatgttaacaa |
14307355 |
T |
|
| Q |
190 |
ttgtacgatctgcaaagtcctc |
211 |
Q |
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||||||||| |||| ||||| |
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| T |
14307356 |
ccgtacgatctacaaaatcctc |
14307377 |
T |
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