View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_142 (Length: 214)
Name: NF18243_low_142
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_142 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 52797009 - 52796839
Alignment:
| Q |
9 |
agaagcaaaggcaatgtttggatctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccg |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52797009 |
agaaacaaaagcaatgtttggatctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccg |
52796910 |
T |
|
| Q |
109 |
aacgattaggacttggtgaaggagcattcactgctgcaacagtagttgatgacaatgaaatgctgagaatc |
179 |
Q |
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| T |
52796909 |
aacgattaggacttggtgaaggagcattcactgctgcaacagtagttgatgacaatgaaatgctgagaatc |
52796839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 52760824 - 52760928
Alignment:
| Q |
31 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtgaagg |
130 |
Q |
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| T |
52760824 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
52760923 |
T |
|
| Q |
131 |
agcat |
135 |
Q |
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||||| |
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| T |
52760924 |
agcat |
52760928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 52798877 - 52798787
Alignment:
| Q |
31 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggact |
121 |
Q |
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| T |
52798877 |
tctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggact |
52798787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 38710649 - 38710728
Alignment:
| Q |
31 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaa |
110 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| || |||||| | ||||||| |||| |||||||||| |
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| T |
38710649 |
tctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaa |
38710728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 42094281 - 42094360
Alignment:
| Q |
31 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaa |
110 |
Q |
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|||||| ||||| ||||||||| || || |||||||||||| |||| |||||||| ||||||| ||| | ||| |||||| |
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| T |
42094281 |
tctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaaccttgtagagcccgaa |
42094360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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