View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_146 (Length: 202)
Name: NF18243_low_146
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_146 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 8697812 - 8697985
Alignment:
| Q |
13 |
cataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactctttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8697812 |
cataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactctttt |
8697911 |
T |
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| Q |
113 |
gcctaataagattggagcaattcctaacaccaattttagattgattagaatcatccgattccatagtgttaact |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8697912 |
gcctaataagattggagcaattcctaacaccaattttagattgattagaatcatctgattccatagtgttaact |
8697985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 9049699 - 9049872
Alignment:
| Q |
13 |
cataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactctttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9049699 |
cataggggaaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactctttt |
9049798 |
T |
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| Q |
113 |
gcctaataagattggagcaattcctaacaccaattttagattgattagaatcatccgattccatagtgttaact |
186 |
Q |
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| T |
9049799 |
gcctaataagattggagcaattcctaacaccaattttagattgattagaatcatctgattccatagtgttaact |
9049872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 13411339 - 13411388
Alignment:
| Q |
85 |
gagaaaaattcagcaggtgaactcttttgcctaataagattggagcaatt |
134 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
13411339 |
gagaaaaactcagcaggagaactcttttgcctaataagattggagcaatt |
13411388 |
T |
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