View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_15 (Length: 542)
Name: NF18243_low_15
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Complemental strand, 6879167 - 6878654
Alignment:
| Q |
18 |
tgatcattatgcaattatcttgaaattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattgctacatcaactaccttaatatatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
6879167 |
tgatcattatgcaattatcttgaaattacttgcaaaaacctcaaatattgttattaactgtaatttcaagattgctacatcaactagcttaatagatata |
6879068 |
T |
|
| Q |
118 |
ttgcttcaactatcaatcacactgcaacaatcacagcccaatcattataaacttaacaacataaattaatttttgaaaccttgcaattactcctaatnnn |
217 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6879067 |
ttgcttcaactatcaatcacactgcaacaat-acagcccaatcatcataaacttaacaacataaattaatttttgaaaccttgcaattactcctaattat |
6878969 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnnnnnnnctcactataatcttctctcacaccaatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctcca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878968 |
atattataatataatatatctcactataatcttctctcacaccaatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctcca |
6878869 |
T |
|
| Q |
318 |
aatcagagtaatgcaatgtctgcagaagcattgccgtaggctttgtctcaaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878868 |
aatcagagtaatgcaatgtctgcagaagcattgccgtaggctttgtctcgaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatg |
6878769 |
T |
|
| Q |
418 |
cgccaccggagacagccattccattagctcctccaccgcctcccgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccac |
517 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878768 |
cgccaccggagacagccattccattagctcctccaccgcctcccgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccac |
6878669 |
T |
|
| Q |
518 |
cgtcccctttgcttc |
532 |
Q |
| |
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||||||||| ||||| |
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| T |
6878668 |
cgtccccttagcttc |
6878654 |
T |
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