View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_17 (Length: 537)
Name: NF18243_low_17
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 27873999 - 27873703
Alignment:
| Q |
11 |
agaatataattagttatgaagtctttatgatatatttattggtaaggggcggtggagcaatctgatcaaaatggcgtcattgatgccatattttcattaa |
110 |
Q |
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| T |
27873999 |
agaatataattagttatgaagtctttatgatatatttatgggtaaggggcggtggagcaatctgatcaaaatggcgtcatggatgccatattttcattaa |
27873900 |
T |
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| Q |
111 |
cttagatatnnnnnnnnnnnnntagaagactttaaattcagactttatgataaatttatgagacataaatacagagtacataggaacgaaaactcgagta |
210 |
Q |
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| T |
27873899 |
tatagatataaaaaaaaaa---tggaagactttaaattcagactttatgataaatttatgagacataaatacagagtacatgggaacgaaaactcgagta |
27873803 |
T |
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| Q |
211 |
actgcagacctgctgttacattaaaatgcaaaagtttaacacacataaccatacaaattgaattctaactttgttctataaatttgataaagaataagag |
310 |
Q |
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| T |
27873802 |
actgcagacctgctgttacattaaaatgcaaaagtttaacacacataaccatacaaattgaattctaactttgttctataaatttgataaagaataagag |
27873703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 439 - 519
Target Start/End: Complemental strand, 27873572 - 27873491
Alignment:
| Q |
439 |
cttcttgatcaagcattccatagaccacataaaaaa-tctgcttccacatgtgaaaaatcaaaaagataaattatagctata |
519 |
Q |
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| T |
27873572 |
cttcttaatcaagcattccatagaccacataaaaaaatctgcttccacatgtgaaaaatcaaaaagataaattatagctata |
27873491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 27873638 - 27873608
Alignment:
| Q |
376 |
ccttcaattaccatgtttctcttcaaccaat |
406 |
Q |
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| T |
27873638 |
ccttcaattaccatgtttctcttcaaccaat |
27873608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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