View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_19 (Length: 505)
Name: NF18243_low_19
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 31981175 - 31981609
Alignment:
| Q |
13 |
aatatattattgaattttaatgaattttatttgcgaattaagtcgctttatgaattcattcacaagtttagtttaaggatgtttgaacaatccactattg |
112 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||| |||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
31981175 |
aatatattattgaatttgaatgaactttatttgcgaatttggttgctttatgaattcatttacaaatttagtt-aaggatgtttgaataatccactattg |
31981273 |
T |
|
| Q |
113 |
cattgatattaatggcatgattttgtataaatggattcttaatttataattaattttcatcaaaatctacatcattcgtaccatcatgaattatctcctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
31981274 |
cattgatattaatggcatgattttgtataaatggattcttaatttatagttaattttcatcaaaatctacattattcataccatcatgaattatctcctc |
31981373 |
T |
|
| Q |
213 |
taa-ttttccagaaatgac-----------------cacttgttcaagaacgttaaattttttaccatttgaactgatttattgtttactcaaatatatt |
294 |
Q |
| |
|
||| ||||||| || |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981374 |
taatttttccataactgaccatcatgtatctttgatcacttgtttaagaactttaaattttttaccatttgaactgatttattgtttactcaaatatatt |
31981473 |
T |
|
| Q |
295 |
cttataaagtttaattagctaagt--gctnnnnnnnnnnnnnntcaaataaagtttggactaataaagttcgtaatccatgttccttattagtctaaaac |
392 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31981474 |
attataaagtttaattagctaagtgcgctaaaaaaagaaaaaatcaaataaagtttggactaataaagttcataatccatgttccttattagtctaaaac |
31981573 |
T |
|
| Q |
393 |
caacagggtaacatacattgttttgattattagtat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981574 |
caacagggtaacatacattgttttgattattagtat |
31981609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 31981636 - 31981674
Alignment:
| Q |
448 |
cttgttttgattataaactacaagattgtccagctttcc |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31981636 |
cttgttttgattataaactacaagattgtccaactttcc |
31981674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University