View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_2 (Length: 763)
Name: NF18243_low_2
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 746
Target Start/End: Complemental strand, 25189059 - 25188344
Alignment:
| Q |
17 |
caaaggggcaagataggcataacattggtaacaaactggttcataccacttggaaacaatagcatacccgatcaaaaggctgccaagagatcacttgatt |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25189059 |
caaaagggcaagataggcataacattggtaacaaactggttcataccacttggaaacaatagcatacccgatcaaaaggctgccaagagatcacttgatt |
25188960 |
T |
|
| Q |
117 |
tccaatttggatggtaattacaaaatccattatctagtacaagaaagtcatatatccatcttatttgaaagctattcccccaccaatatttcaaatacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25188959 |
tccaatttggatggtaattacaaaatccattatctagtacaagaaagtcatatatccatcttatttgaaagctactcccccaccaatatttcaaatacac |
25188860 |
T |
|
| Q |
217 |
cgattccattcaaatacactatttcggacagagaaaatcatannnnnnngtccattcgaaatggcgcatttggatgaaaccggagttttagaaattgttg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
25188859 |
cgattccattcaaatacactatttcggacagagaaaatcatatttttttgtccattcgaaatggtgtatttggatgaacccggagttttagaaattgttg |
25188760 |
T |
|
| Q |
317 |
gaggataacaacactttggnnnnnnnnnnnnggccaagtgacctagtgactaaaatttattttataagaagaataagtaccgtatctgtctgaggttcaa |
416 |
Q |
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||||||||||||||||||| | |||||||| | ||| |||||||||||||||||||||||||||||| | ||| |||| |
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| T |
25188759 |
gaggataacaacactttggttttcatttttt-gtcaagtgacttggtggctaaaatttattttataagaagaataagta----ttgtgtttgag------ |
25188671 |
T |
|
| Q |
417 |
acctcaacccctgcatataacaatgcactgtcat---atcaactgtactatactcatatgaagaaataatatatatccatgtatagtccatacatacatt |
513 |
Q |
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|||| |||||||||||| |||||| | |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
25188670 |
-------tccctacatataacaatgtactgtcctgtcatcaactgtactatgctcatatagacaaataatatatatccatgtatagtccatacatacatt |
25188578 |
T |
|
| Q |
514 |
taaacaattcataggttaaggtgcacaaggacaaatgtatcaaaatattaaaggttaatac-tannnnnnnnnnnnngaatttgtttgattggttaattt |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
25188577 |
taaacaattcataggttaaggtgcacaaggacaaatgtatcaaaatattaaaggttaatacttttttttatttttttgaatttgtttgatcggttaattt |
25188478 |
T |
|
| Q |
613 |
caggtttatggaacctctaacaacgggagattatcctgaaagcatgagagccatagtgaaaaaccgattacctaagttcacaaaattgcaatcaaagcta |
712 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25188477 |
caggtttatggaacctctaacaacgggagattattctgaaagcatgagagccatagtgaaaaaccgattacctaagttcacaaaattgcaatcaaagcta |
25188378 |
T |
|
| Q |
713 |
gtgaatggttcatttgattttattggtataaact |
746 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
25188377 |
gtgaatggttcatttgattttattggtataaact |
25188344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 746
Target Start/End: Original strand, 25252953 - 25253061
Alignment:
| Q |
638 |
ggagattatcctgaaagcatgagagccatagtgaaaaaccgattacctaagttcacaaaattgcaatcaaagctagtgaatggttcatttgattttattg |
737 |
Q |
| |
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|||||||||||| ||| |||||||||| |||| | | | ||||| ||||| |||||| |||||| |||||||||| |||||||||||||||||||| |
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| T |
25252953 |
ggagattatcctaaaaccatgagagccttagtcagatcaaggttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgattttattg |
25253052 |
T |
|
| Q |
738 |
gtataaact |
746 |
Q |
| |
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| ||||||| |
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| T |
25253053 |
gcataaact |
25253061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 680 - 746
Target Start/End: Complemental strand, 25168271 - 25168205
Alignment:
| Q |
680 |
ttacctaagttcacaaaattgcaatcaaagctagtgaatggttcatttgattttattggtataaact |
746 |
Q |
| |
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||||| ||||| |||||| |||||| |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
25168271 |
ttaccaaagtttacaaaagagcaatctaagctagtgagtggttcatttgattttattggcataaact |
25168205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 664
Target Start/End: Complemental strand, 25159775 - 25159720
Alignment:
| Q |
609 |
atttcaggtttatggaacctctaacaacgggagattatcctgaaagcatgagagcc |
664 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||||||||| |||||||||||||| |
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| T |
25159775 |
atttcaggtttatggatccactaacatcaggagattatcccaaaagcatgagagcc |
25159720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 469
Target Start/End: Original strand, 34773718 - 34773777
Alignment:
| Q |
410 |
ggttcaaacctcaacccctgcatataacaatgcactgtcatatcaactgtactatactca |
469 |
Q |
| |
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||||| ||||||| ||||||||||||| |||||| |||| ||||||||| ||||| |||| |
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| T |
34773718 |
ggttcgaacctcagcccctgcatataataatgcattgtcctatcaactgaactatgctca |
34773777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 9031833 - 9031793
Alignment:
| Q |
403 |
tgtctgaggttcaaacctcaacccctgcatataacaatgca |
443 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| |
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| T |
9031833 |
tgtctgaggttcaaacttcaagccctgcatataacaatgca |
9031793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 458
Target Start/End: Original strand, 16110055 - 16110103
Alignment:
| Q |
410 |
ggttcaaacctcaacccctgcatataacaatgcactgtcatatcaactg |
458 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
16110055 |
ggttcgaacctcaacccctgcatataataatgcattgtcctatcaactg |
16110103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 5598775 - 5598808
Alignment:
| Q |
403 |
tgtctgaggttcaaacctcaacccctgcatataa |
436 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
5598775 |
tgtctgaggttcaaacctcaacccctacatataa |
5598808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 39966074 - 39966107
Alignment:
| Q |
403 |
tgtctgaggttcaaacctcaacccctgcatataa |
436 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
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|
| T |
39966074 |
tgtctgaggttcgaacctcaacccctgcatataa |
39966107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 18065314 - 18065281
Alignment:
| Q |
410 |
ggttcaaacctcaacccctgcatataacaatgca |
443 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |
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| T |
18065314 |
ggttcgaacctcaacccctgcatataacaatgca |
18065281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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