View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_20 (Length: 500)
Name: NF18243_low_20
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 5289312 - 5288832
Alignment:
| Q |
18 |
tggaccacatggaatttcaaggaatggaacccctatttcagttgctttgaatgtctagaaagagagaatttgaaattacaagtttctaacaattttctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
5289312 |
tggaccacatggaatttcaaggaatggaacccctatttcagttgctttgaatgtctagaaagagagaatttgaaatcacaaatttctaacaattttctta |
5289213 |
T |
|
| Q |
118 |
ttggtttaaataatttaacgtaaaatataaggaattcaaatttttgcacataaaaattgaaatggaagattcacccnnnnnnntggaaatagaagggaga |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5289212 |
ttcgtttaaataatttaacgtaaaatataaggaattcaaatttttgcacataaaaattgaaatggaagattcacccaaaaaaatggaaatggaagggagg |
5289113 |
T |
|
| Q |
218 |
tgaagactttcatgataaagggaggagagaaacaaaaatagaaagagtaaaccctcatcttgcatggaaattttatttttgtttcattggactaaaacac |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289112 |
tgaagactttcaggataaagggaggagagaaacaaaaatagaaagagtaaaccctcatcttgcatggaaattttatttttgtttcattggactaaaacac |
5289013 |
T |
|
| Q |
318 |
ttcaatatggtagaatttaaaaacatattaagagaagattttagaggattttaaataaattgttgaatcattttcacctgtttatcaatactctcaaatc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289012 |
ttcaatatggtagaatttaaaaacatattaagagaagattttagaggattttaaataaattgttgaatcattttcacctgtttatcaatactctcaaatc |
5288913 |
T |
|
| Q |
418 |
aagaaaaactaacttttat--nnnnnnngtcttcaattctcttcaactcttgtgcctccaaagctctccattcttctcact |
496 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
5288912 |
aagaaaaactaacttttataaaaaaaaagtcttcatttctcttcaactcttgtgcctccaaaactctccattcttttcact |
5288832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University