View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_21 (Length: 488)
Name: NF18243_low_21
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 10275394 - 10274945
Alignment:
| Q |
18 |
agagagaaagaaataaaaaatgtaattgatttgattgtttggtactagaaaaatagaagagaaataagaaagagatagatataataattttttgaatcga |
117 |
Q |
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| T |
10275394 |
agagagaaagaaataaaaaatgtaactgatttgattgtttggtactagaaaaatagaagagaaataagaaagagataaatataataattttttgaatcga |
10275295 |
T |
|
| Q |
118 |
caaataaatcccttcatnnnnnnntagnnnnnnnnn-ctctttacaaattgatggtatttgtctcgctttgctttgcaagtgtagggagaacagcaaaaa |
216 |
Q |
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| T |
10275294 |
caaataagtcccttcataaaaaaatagttttttttttctctttataaattgatggtatttgtctcgcttttctttgcaagtgtagggagaacagcaaaaa |
10275195 |
T |
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| Q |
217 |
-ttgcaattttgtcttacagttgggtcaataaagtttaatattgggacttaaaacaagttttaatatatgtagcaatttttgt-ctgcaaatgagtcatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| |||||||||| |
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| T |
10275194 |
gttgcaattttgtcttacagttgggtcaataaagtttaatattggggcttaaaacaagttttaatatatgtgacaattttttttctgcatatgagtcatt |
10275095 |
T |
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| Q |
315 |
tttgtttataaaatttaatnnnnnnntaaattttagttggtgggtataaagtaaggtcttagtagctttacctttggggtgacatgtttacgtctttagg |
414 |
Q |
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| T |
10275094 |
tttgtttataaaatttaatagaaaaataaattttagttggtgggcctaaagtgaggtcttagtagctttatctttggggtgacatttttacgtctttaag |
10274995 |
T |
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| Q |
415 |
gtctgagagggtattgttgacattgatcttatttgtaagaagatacatga |
464 |
Q |
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| T |
10274994 |
gtctgggagggtattgttgacattgatcttatttgtaagaagataaatga |
10274945 |
T |
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Back To:
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 39104050 - 39104125
Alignment:
| Q |
258 |
tgggacttaaaacaagttttaatatatgtagcaatttttgtctgcaaatgagtcatttttgtttataaaatttaat |
333 |
Q |
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| T |
39104050 |
tggggcttaaagaaagttttaatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaatataat |
39104125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 17944481 - 17944521
Alignment:
| Q |
292 |
tttttgtctgcaaatgagtcatttttgtttataaaatttaa |
332 |
Q |
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| T |
17944481 |
tttttgtctgaatatgagacatttttgtttataaaatttaa |
17944521 |
T |
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