View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_23 (Length: 482)
Name: NF18243_low_23
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 11764230 - 11764682
Alignment:
| Q |
13 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11764230 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgctttatgttgctaatttaatcatg |
11764329 |
T |
|
| Q |
113 |
ttgcaattgttaatttctggttgaattgcaatttttcgtcgtagtttaaatctaacattgaggtgcaagtatctgaaaaaatatataattcaatgattta |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11764330 |
ttgcaattgttaattcctggttgaattgcaatttttcgtcgtagtttaaatctaacattgaggtgcaagtatctgaaaaaatatataattcaatgattta |
11764429 |
T |
|
| Q |
213 |
tagtagatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgaggcagaaactagg |
312 |
Q |
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| T |
11764430 |
tagtagatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgaggcagaaactagg |
11764529 |
T |
|
| Q |
313 |
agatgcagaaactacaactctgttggccaaagcagtttacttgattaacattggaagtaatgattatttttcagaaaattccagcttatacactcatgaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11764530 |
agatgcagaaactacaactctgttggccaaagcagtttacttgattaacattggaagcaatgattatttttcagaaaattccagcttatacactcatgaa |
11764629 |
T |
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| Q |
413 |
aaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaa |
465 |
Q |
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| T |
11764630 |
aaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaa |
11764682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 242 - 465
Target Start/End: Original strand, 11778870 - 11779093
Alignment:
| Q |
242 |
caggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgaggcagaaactaggagatgcagaaactacaactctgttggcca |
341 |
Q |
| |
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||||||| |||||||||||| ||||||| ||||||||||||||| ||| ||| |||||| |||| ||||||||||| |||||| |||||||||||||||| |
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| T |
11778870 |
caggtgatagatctaaagacacaattgaattatttcaagaatgtcaagaaagtattgagacagagactaggagatgaagaaaccacaactctgttggcca |
11778969 |
T |
|
| Q |
342 |
aagcagtttacttgattaacattggaagtaatgattatttttcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatct |
441 |
Q |
| |
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|||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11778970 |
aagctgtttacttgattaacataggaaacaatgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatct |
11779069 |
T |
|
| Q |
442 |
cacagatgtgatcaaagtatgtaa |
465 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11779070 |
cacagatgtgatcaaagtatgtaa |
11779093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 234 - 465
Target Start/End: Original strand, 11784279 - 11784510
Alignment:
| Q |
234 |
gatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgaggcagaaactaggagatgcagaaactacaactct |
333 |
Q |
| |
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||||||| ||||||| |||||||||||| |||||||||||||| |||||||| ||| ||| |||||| |||| ||||||||||| |||||| |||||||| |
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| T |
11784279 |
gatatttccaggtgacagatctaaagacacaattgacttatttgaagaatgtcaagaaagtattgagacagagactaggagatgaagaaaccacaactct |
11784378 |
T |
|
| Q |
334 |
gttggccaaagcagtttacttgattaacattggaagtaatgattatttttcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagtt |
433 |
Q |
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| |||||||||| |||||||||||||| || ||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11784379 |
gctggccaaagctgtttacttgattaatataggagggaatgattattttgtagaaaattccagcttatacactcatgaaaaatacgtatccatggtagtt |
11784478 |
T |
|
| Q |
434 |
ggtaatctcacagatgtgatcaaagtatgtaa |
465 |
Q |
| |
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|||||||| ||| ||||||||||||||||| |
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| T |
11784479 |
ggtaatcttacaacagtgatcaaagtatgtaa |
11784510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 465
Target Start/End: Original strand, 11770640 - 11770870
Alignment:
| Q |
235 |
atattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgttaagcaagaattgaggcagaaactaggagatgcagaaactacaactctg |
334 |
Q |
| |
|
|||||| ||||||| ||||||| |||| ||||||||||||||||||||||| ||| | | | | ||||| ||| ||||||||| |||||| |||| |||| |
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| T |
11770640 |
atatttccaggtgatagatctagagacacaattgacttatttcaagaatgtcaagaacgtactaaggcaaaaattaggagatgaagaaaccacaaatctg |
11770739 |
T |
|
| Q |
335 |
ttggccaaagcagtttacttgattaacattggaagtaatgattatttttcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttg |
434 |
Q |
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||||||||||| ||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
11770740 |
ttggccaaagctgtttacttgattaacattgcaggcaatgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttg |
11770839 |
T |
|
| Q |
435 |
gtaatctcacagatgtgatcaaagtatgtaa |
465 |
Q |
| |
|
||||| | ||| | ||||||||||||||| |
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|
| T |
11770840 |
gtaatattacaacttggatcaaagtatgtaa |
11770870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 11783680 - 11783777
Alignment:
| Q |
17 |
atatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatgtt |
114 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
11783680 |
atatattaatggagttaattttgcatcagcaggagctggtgctttagtagaaacacatcaaggactggtctgttttatgttgttgatttaatcatgtt |
11783777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 11778311 - 11778405
Alignment:
| Q |
13 |
aagaatatgttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaa |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||| |||| |||| |||||| |||||||| |
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| T |
11778311 |
aagaatatattaatggaatcaattttgcatcagcagcagctggggctttagtagaaaccaatcaaggacgggtcagtttaatgttgttaatttaa |
11778405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 11770396 - 11770498
Alignment:
| Q |
22 |
ttaatggaatcaattttgcatcagcaggagctggggctttagttgaaacacatgaaggactggtctgttttatgttgctaatttaatcatgttgcaattg |
121 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||| || ||||| |||| |||||||| ||| ||||||||| |||||||||| | |
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| T |
11770396 |
ttaatggaatcaattttgcatctgctggagctggggctttagtagaaacctatcaaggaatggtatgttttat-ttgttaatttaatgatgttgcaatcg |
11770494 |
T |
|
| Q |
122 |
ttaa |
125 |
Q |
| |
|
|||| |
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|
| T |
11770495 |
ttaa |
11770498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 24797640 - 24797736
Alignment:
| Q |
266 |
ttgacttatttcaagaatgttaagcaagaattgaggcagaaactaggagatgcagaaactacaactctgttggccaaagcagtttacttgattaaca |
362 |
Q |
| |
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|||||||||||||||||||| || | |||||| |||||||||||| ||| |||||| ||||||||| ||| || ||| |||||||||||||||| |
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|
| T |
24797640 |
ttgacttatttcaagaatgtcaaagagttattgagacagaaactaggatatgaagaaaccacaactctgctggtcagagctgtttacttgattaaca |
24797736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 6539821 - 6539888
Alignment:
| Q |
218 |
gatgatatgaaattttgatattttcaggtgaaagatctaaagactcaattgacttatttcaagaatgt |
285 |
Q |
| |
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|||||| ||| |||||||||||| | ||||| |||| |||||||||||||| |||||| |||||||| |
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| T |
6539821 |
gatgatgtgatattttgatatttccgggtgatagatttaaagactcaattgttttattttaagaatgt |
6539888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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