View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_24 (Length: 480)
Name: NF18243_low_24
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 131 - 472
Target Start/End: Complemental strand, 1482500 - 1482159
Alignment:
| Q |
131 |
ttggctgtaggggttcttttgagtttcatcaactattgcttaacttcacgctcaattatatcaatcaaatgcaatagctgcttcttctgaggagtcaaaa |
230 |
Q |
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| T |
1482500 |
ttggctgtaggggttctttttagtttcatcaactattgcttaacttcacgctcaattatatcaatcgaatgcaatagctgcttcttctgaggagtcagaa |
1482401 |
T |
|
| Q |
231 |
gctctgattcaccatcttcagcagcaggaagtttcgcaatgtcgatgatgatttttggaactttacttccataaggtgtactcagctttatgcaggattt |
330 |
Q |
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| T |
1482400 |
gctctgattcaccatcttcagcagcaggaagtttcgcaatgtcgatgatgatttttggaactttacttccataaggtgtactcagctttatgcaggattt |
1482301 |
T |
|
| Q |
331 |
tggtgatttcttgtggacacgtgaagaagatccaaaagcagcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttcca |
430 |
Q |
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| T |
1482300 |
tggtgatttcttgtggacacgtgaagaagatccaaaagcagcagagaatgaagatggatcagagaaaatggtcagctggttagcatgaactggtgttcca |
1482201 |
T |
|
| Q |
431 |
gtttgctcaatctcctcagttcccagtctctcccttcttctc |
472 |
Q |
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| T |
1482200 |
gtttgctcaatctcctcagttcccagtctctccctccttctc |
1482159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 36717414 - 36716947
Alignment:
| Q |
1 |
caaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatcttcttcaattcacctcatggacattagg |
100 |
Q |
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|||||||||||| || ||||||||| ||| |||||||||| | |||| ||| |||| |||||||| ||||||||||||||||||||||||||||| | | |
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| T |
36717414 |
caaatctcctttcccatttgctctaagatttctccttcaattctctttaatt-ttttcctgcactttaaatcttcttcaattcacctcatggacatcaag |
36717316 |
T |
|
| Q |
101 |
gtcgaaacccttttctgatgttctgcttttttggctgtaggggttcttttgagtttcatcaactattgcttaacttcacgctcaattatatcaatcaaat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||| |
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| T |
36717315 |
gtcctaacccttttctgatgttctgcttttttggctgtaggggttctcttgagtttcatcaactcttgcttcacttcacgctcaattatatcaatcgaat |
36717216 |
T |
|
| Q |
201 |
gcaatagctgcttcttctgaggagtcaaaagctctgattcaccatcttcagcagcaggaagtttcgcaatgtcgatgatgatttttggaactttacttcc |
300 |
Q |
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||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
36717215 |
gcaatagct---tcttctgaggagtcagaagctcagattcaccatcttcagcagcaggaagttttgcaatgtcaatgatgatttttggaactttacttcc |
36717119 |
T |
|
| Q |
301 |
ataaggtgtactcagctttatgcaggattttggtgatttcttgtggacacgtgaagaagatccaaaagcagcagagaatgaagatggatcagagaaaatg |
400 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36717118 |
ataaggtgttttcagcttgatgcaggattttggtgattttttgtggacgcgtgaagaagatccaatagcagcagagaatgaagatggatcagagaaaatg |
36717019 |
T |
|
| Q |
401 |
gtcagctggttagcatgaactggtgttccagtttgctcaatctcctcagttcccagtctctcccttcttctc |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
36717018 |
gtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctccttctc |
36716947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1482687 - 1482586
Alignment:
| Q |
1 |
caaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatcttcttcaattcacctcatggacattagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1482687 |
caaatctccttttccttttgctctatgatatctccttcaactatcttcaatagtttttctgcacttcaaatctttttcaattcacctcatggacattagg |
1482588 |
T |
|
| Q |
101 |
gt |
102 |
Q |
| |
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|| |
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|
| T |
1482587 |
gt |
1482586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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