View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_25 (Length: 475)

Name: NF18243_low_25
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_25
NF18243_low_25
[»] chr8 (2 HSPs)
chr8 (165-453)||(22573166-22573448)
chr8 (154-241)||(9028642-9028729)
[»] chr4 (2 HSPs)
chr4 (157-453)||(33235600-33235886)
chr4 (160-241)||(45413778-45413859)
[»] chr1 (4 HSPs)
chr1 (154-236)||(45792691-45792773)
chr1 (160-241)||(19806764-19806845)
chr1 (159-236)||(50004909-50004986)
chr1 (157-241)||(26793780-26793864)
[»] chr2 (1 HSPs)
chr2 (165-236)||(7670408-7670479)
[»] chr7 (2 HSPs)
chr7 (166-242)||(39594667-39594743)
chr7 (160-236)||(23318951-23319027)
[»] chr6 (2 HSPs)
chr6 (160-242)||(8547442-8547524)
chr6 (173-243)||(8573794-8573864)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 165 - 453
Target Start/End: Original strand, 22573166 - 22573448
Alignment:
Q  165 ataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaacaacatgatagaataaaactacat 264  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| ||||||||||||    
T  22573166 ataagtttaacctgtttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtgggttaaca---acatgataggataaaactacat 22573262  T
Q  265 acacgtgttttctatttcttccaaaacctttcctcgactcccacctgcggctatactactccactgnnnnnnnnnnnnnnnnnnncttctttcccacaaa 364  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||| ||                   ||||||||||||  |    
T  22573263 acgcgtgttttctatttcttccaaaacctttcttcgactcccacctgtggcagtactactccagtg-ttttttctttgtttttttcttctttcccac--a 22573359  T
Q  365 atagccattattctgttccacattattattttcctcttcgtttcttcttcaatttttttaacgattcacttctttgtgaaatcgatctc 453  Q
    ||||||||||||||||||||||||| ||||||||| |  ||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  22573360 atagccattattctgttccacattactattttcctgtaggtttcatctacaatttttttaacgattcacttctttgtgaaatcgatctc 22573448  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 9028729 - 9028642
Alignment:
Q  154 aacagaaaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaac 241  Q
    |||| ||||| |||| || ||||| ||| |||||||||  |||||||||||||||||||||||| || ||||||| ||||||| ||||    
T  9028729 aacataaaaggataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatgggttagcaac 9028642  T

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Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 157 - 453
Target Start/End: Complemental strand, 33235886 - 33235600
Alignment:
Q  157 agaaaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaacaacatgatagaataa 256  Q
    |||||| ||||| |||||||||||  |||||||||  |||||||||||||||||| ||||| ||| |||||| || |||| ||| |   |||||| ||||    
T  33235886 agaaaataataagtttaacctgttcttaatcctatcctattgaacctttgtaattattatccttaatttttgatgagttagcaata---tgataggataa 33235790  T
Q  257 aactacatacacgtgttttctatttcttccaaaacctttcctcgactcccacctgcggctatactactccactgnnnnnnnnnnnnnnnnnnncttcttt 356  Q
    |||||||||| |    ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||                   |||||||    
T  33235789 aactacatacgc----tttctatttcttcgaaaacctttctttgactcccacctgcggctatactactccactgttttttctttgttttttc-cttcttt 33235695  T
Q  357 cccacaaaatagccattattctgttccacattattattttcctcttcgtttcttcttcaatttttttaacgattcacttctttgtgaaatcgatctc 453  Q
    ||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  33235694 cccgcaa--tacccattattctgttccacattattattttcctcttcgtttcttcttcaatttttgtaacaattcacttctttgtgaaatcgatctc 33235600  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 45413859 - 45413778
Alignment:
Q  160 aaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaac 241  Q
    |||| ||||||| ||||| ||||  |||||||  |||  ||||||||| ||| ||||| |||||||||||||||||| ||||    
T  45413859 aaaggataaattaaacctatttcctatcctatcctatctaacctttgttatttttatccttagtttttggtgggttagcaac 45413778  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 45792773 - 45792691
Alignment:
Q  154 aacagaaaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggtta 236  Q
    |||||||||  |||| |||||| |||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||||    
T  45792773 aacagaaaatgataagtttaacatgtttctaatcctatcctattgagcctttgtaattcttatccttagtttttggtgggtta 45792691  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 19806845 - 19806764
Alignment:
Q  160 aaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaac 241  Q
    |||| ||||||| ||||| |||||||||||||  |||| |  ||||||  |||| ||| |||||||||||||||||||||||    
T  19806845 aaaggataaattaaacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggttaacaac 19806764  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 50004986 - 50004909
Alignment:
Q  159 aaaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggtta 236  Q
    ||||| |||| || ||||| |||||||||||||  || | | ||||||| ||| ||||| ||||||||||||||||||    
T  50004986 aaaaggataatttaaacctatttctaatcctatcctaatcaccctttgttatttttatccttagtttttggtgggtta 50004909  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 26793780 - 26793864
Alignment:
Q  157 agaaaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaac 241  Q
    ||||||| |||| || ||| | |||||||||||||  || | ||||||||| ||| ||||  |||||||||||||||||| ||||    
T  26793780 agaaaaggataacttaaacttatttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtgggttagcaac 26793864  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 7670408 - 7670479
Alignment:
Q  165 ataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggtta 236  Q
    |||| ||||||||||||||||||||||  |||||| | ||||||||||||||| ||| ||||||||||||||    
T  7670408 ataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggtta 7670479  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 39594667 - 39594743
Alignment:
Q  166 taaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaaca 242  Q
    |||||| ||||| || |||||| ||| ||||| | ||||||||||| ||||| |||||||||| ||||||| |||||    
T  39594667 taaattaaacctattactaatcttatcatattcatcctttgtaatttttatccttagtttttgatgggttagcaaca 39594743  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 23319027 - 23318951
Alignment:
Q  160 aaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggtta 236  Q
    |||| |||| || ||||| ||| |||||||||  |||||| ||||||||||| ||||| || ||||||| |||||||    
T  23319027 aaaggataatttaaacctatttttaatcctatcctattgagcctttgtaatttttatccttggtttttgatgggtta 23318951  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 8547524 - 8547442
Alignment:
Q  160 aaagaataaatttaacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaaca 242  Q
    |||| |||| || ||||| ||||||||| ||| ||||| | ||||||| ||| ||||  |||||||||||||||||| |||||    
T  8547524 aaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaaca 8547442  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 8573864 - 8573794
Alignment:
Q  173 aacctgtttctaatcctattatattgaacctttgtaattcttatcattagtttttggtgggttaacaacaa 243  Q
    ||||| ||||||||| ||| ||||| | ||||||| ||| ||||  |||||||||||||||||| ||||||    
T  8573864 aacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaacaa 8573794  T

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