View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_27 (Length: 472)
Name: NF18243_low_27
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 30515472 - 30515043
Alignment:
| Q |
17 |
aaaatatacatctataactaaagatgtttaagttgtcccctgaatttagatggacaatgcatagataatatatgcatg-tccatggttcgaaccccgaac |
115 |
Q |
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| T |
30515472 |
aaaatatacatctataactaaagatgtttaagttgtcccgtgaatttatatcgacaatgtata----atatataaaagatccatggttcgaaccccgaac |
30515377 |
T |
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| Q |
116 |
actacatcnnnnnnnnnnnnnnngatgtctaagttaatttgcaattctcttgtaatatttcttgggcttccactctcnnnnnnngtcaacaaaaagtgag |
215 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30515376 |
actacatcgaaaagaaaaa----gatgtctaagttaatttgcaattcccttgtaatatttcttgggcttccactctctttttttgtcaacaaaaagtgag |
30515281 |
T |
|
| Q |
216 |
ttatattttgtagtgcccttccatatttatttatgttttatttgccaaaaagattttcatgttgaaattggaatttattcttgccggacttaagatctat |
315 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30515280 |
ttagattttgtagtgcccttccagatttatttatgttttatttgccaaaaagattttcatgttgaaattggaatttattcttgccggacttaagatctat |
30515181 |
T |
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| Q |
316 |
aaatggtggtgtataatggtctttgagtgttggaccttcgtcagccgtcttcgtctcaaacataggagggtgataaatgtgaagacacttcaacgctcaa |
415 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30515180 |
aaatggtggtgtagaatggtctttgagtgttggaccttcgtcagccgtcttcgtctcaaacataggagggtgatatttgtgaagacacttcaacgctcaa |
30515081 |
T |
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| Q |
416 |
atttgtggacttacgatgtattttagaatcaaatgtat |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
30515080 |
atttgtggacttacgatgtattttagaatcaaatgtat |
30515043 |
T |
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