View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_28 (Length: 471)

Name: NF18243_low_28
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_28
NF18243_low_28
[»] chr3 (9 HSPs)
chr3 (1-456)||(30411155-30411610)
chr3 (1-216)||(30408231-30408443)
chr3 (294-456)||(30408549-30408711)
chr3 (325-456)||(30421788-30421919)
chr3 (74-222)||(30421342-30421487)
chr3 (327-456)||(30404719-30404848)
chr3 (74-145)||(30404484-30404555)
chr3 (353-439)||(30401423-30401509)
chr3 (342-391)||(30388899-30388948)
[»] chr5 (1 HSPs)
chr5 (325-385)||(34150085-34150145)
[»] chr2 (1 HSPs)
chr2 (345-393)||(31445298-31445346)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 30411155 - 30411610
Alignment:
Q  1 ttgaagtgtttcacattcaatgagctaaaaactgctacgacgtactttcatccaagaagtcaagtggatgaacgtgggtttggtagtgtctttaaggggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  30411155 ttgaagtgtttcacattcaatgagctaaaaactgctacgacgtactttcatccaagcggtcaagtggatgaacgtgggtttggtagtgtctttaaggggt 30411254  T
Q  101 ggatcgatgagcacaagctagctcctactaaacaaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatga 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411255 ggatcgatgagcacacgctagctcctactaaacaaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatga 30411354  T
Q  201 atggttggtgagtgtcattttattatttcattttgaagtttatgaaacttattttctttagcaaattaaatagattatgacagatgagaattctgatgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411355 atggttggtgagtgtcattttattatttcattttgaagtttatgaaacttattttctttagcaaattaaatagattatgacagatgagaattctgatgag 30411454  T
Q  301 actaattaaaccttatattttaggcagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagaggatagcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411455 actaattaaaccttatattttaggcagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagaggatagcta 30411554  T
Q  401 ccgaatttttgtgtacgaatttttggccgagggaagtttggataatcatttgttta 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30411555 ccgaatttttgtgtacgaatttttggccgagggaagtttggataatcatttgttta 30411610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30408231 - 30408443
Alignment:
Q  1 ttgaagtgtttcacattcaatgagctaaaaactgctacgacgtactttcatccaagaagtcaagtggatgaacgtgggtttggtagtgtctttaaggggt 100  Q
    |||||||||||||||||||||||| |||||||||| || |   |||||||||||||  || || | ||||||||||| |||||||| || || |||||||    
T  30408231 ttgaagtgtttcacattcaatgaggtaaaaactgcgacaagaaactttcatccaagtggtgaactcgatgaacgtggatttggtagggtattcaaggggt 30408330  T
Q  101 ggatcgatgagcacaagctagctcctactaaacaaggtactggttatgttgttgctgttaagatgtttatcaaagaaagcagccaactgggacagaatga 200  Q
    ||||||||||||||| || ||||||||| |||| ||||||||||| |||||||||||| | |||||||| ||| ||||||| |||   || ||| | |||    
T  30408331 ggatcgatgagcacatgcaagctcctacgaaaccaggtactggttttgttgttgctgtgatgatgtttaacaatgaaagcaacca---ggaacatagtga 30408427  T
Q  201 atggttggtgagtgtc 216  Q
    ||||||||||||||||    
T  30408428 atggttggtgagtgtc 30408443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 294 - 456
Target Start/End: Original strand, 30408549 - 30408711
Alignment:
Q  294 tgatgagactaattaaaccttatattttaggcagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagagg 393  Q
    |||||||| |||||||||||| || || ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  30408549 tgatgagaataattaaaccttgtacttcaggcaaaaatcaattaccttgggcagctgcgtcatcctaatctcgtgaaactgattggttactgcttagagg 30408648  T
Q  394 atagctaccgaatttttgtgtacgaatttttggccgagggaagtttggataatcatttgttta 456  Q
     |  ||| || ||||| || || |||||| || || | |||| ||||||||||||||||||||    
T  30408649 gttcctatcggattttagtatatgaatttgtgaccaaaggaaatttggataatcatttgttta 30408711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 325 - 456
Target Start/End: Original strand, 30421788 - 30421919
Alignment:
Q  325 cagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagaggatagctaccgaatttttgtgtacgaattttt 424  Q
    ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||  |||||| ||||| || || |||||| |    
T  30421788 cagaaatcaattaccttggacagctgcatcatccaaatctagtgaaactgataggttactgcttagaggatgactaccggattttggtatatgaatttgt 30421887  T
Q  425 ggccgagggaagtttggataatcatttgttta 456  Q
    | || |||||||||||||||||||||||||||    
T  30421888 gaccaagggaagtttggataatcatttgttta 30421919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 30421342 - 30421487
Alignment:
Q  74 gtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaacaaggtactggttatgttgttgctgttaagatgtttatcaa 173  Q
    |||| |||||| |||| |||||||| ||||||||||||||||  |||||||||||||||| ||||||||||| |||| ||||||| |||| | ||| | |    
T  30421342 gtggatttggttgtgtatttaagggttggatcgatgagcacacactagctcctactaaaccaggtactggttttgttattgctgtcaagaggcttaacca 30421441  T
Q  174 agaaagcagccaactgggacagaatgaatggttggtgagtgtcatttta 222  Q
    ||||||||| ||   |||||| | |||||||||||||||| ||||||||    
T  30421442 agaaagcagtca---gggacatagtgaatggttggtgagtctcatttta 30421487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 456
Target Start/End: Original strand, 30404719 - 30404848
Alignment:
Q  327 gaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactgattagaggatagctaccgaatttttgtgtacgaatttttgg 426  Q
    |||||||||||||| || |||||||||||||||||||| |||||| |||||||||| ||  ||||||||   | | | ||||| || || |||||| |      
T  30404719 gaaatcaattatctgggacagctgcatcatcctaatcttgtgaaattgattggttattgcatagaggatgaatgctggattttggtatatgaatttctta 30404818  T
Q  427 ccgagggaagtttggataatcatttgttta 456  Q
    || |||||||||| ||||||| ||||||||    
T  30404819 ccaagggaagtttagataatcttttgttta 30404848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 30404484 - 30404555
Alignment:
Q  74 gtgggtttggtagtgtctttaaggggtggatcgatgagcacaagctagctcctactaaacaaggtactggtt 145  Q
    |||| |||||| |||| |||||||| ||||||||||||||||  ||||| || |||||||||||||||||||    
T  30404484 gtggatttggttgtgtatttaagggttggatcgatgagcacacactagccccgactaaacaaggtactggtt 30404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 439
Target Start/End: Original strand, 30401423 - 30401509
Alignment:
Q  353 tcatcctaatctcgtgaaactgattggttactgattagaggatagctaccgaatttttgtgtacgaatttttggccgagggaagttt 439  Q
    |||||||||||| |||| ||||||||||||||| |||||||||  ||||| |||||| || || |||| ||||| | ||||||||||    
T  30401423 tcatcctaatcttgtgagactgattggttactgcttagaggatgtctacccaattttggtatatgaatatttggacaagggaagttt 30401509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 30388899 - 30388948
Alignment:
Q  342 gggcagctgcatcatcctaatctcgtgaaactgattggttactgattaga 391  Q
    |||||||||  |||||||||||| |||| ||||||||||||||| |||||    
T  30388899 gggcagctgagtcatcctaatcttgtgagactgattggttactgcttaga 30388948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 34150085 - 34150145
Alignment:
Q  325 cagaaatcaattatcttgggcagctgcatcatcctaatctcgtgaaactgattggttactg 385  Q
    ||||||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||    
T  34150085 cagaaatcaattacctgggacagctgcatcatcctaatcttgtgaaactgatcggttactg 34150145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 31445298 - 31445346
Alignment:
Q  345 cagctgcatcatcctaatctcgtgaaactgattggttactgattagagg 393  Q
    ||||||| |||||||||||| || ||||||||||||||||| |||||||    
T  31445298 cagctgcgtcatcctaatcttgtcaaactgattggttactgcttagagg 31445346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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