View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_29 (Length: 465)
Name: NF18243_low_29
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_29 |
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| [»] scaffold0501 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 15816751 - 15817191
Alignment:
| Q |
11 |
atgaatgaaaacataattgcaataattaatagaatagtttagagattacaaagcaagattacaatatatcaaggagaggagtgggctctaattgcaatac |
110 |
Q |
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| T |
15816751 |
atgaatgaaaacataattgcaataattaatagagtagtttagagattacaaagcaagattacaatatatcaaggagaggagtgggctctaattgcagtaa |
15816850 |
T |
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| Q |
111 |
tcaatcaaaatgttcctgaaatttcaatcatccacgaaccaactctcattctcatcaatggaatgg-ataaggggttgtgaggtctcaagtggttgctaa |
209 |
Q |
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| T |
15816851 |
tcaatcaaaatgttgctgaaatttcaattatccaagaagtaactatcatgttcatcaatggaatgggatgaggggttgtgaggtctcaaatggttgctaa |
15816950 |
T |
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| Q |
210 |
ccctagctggaaacgaccgctgaaattgggtgaagatttcagaccattaacaaaattgtcatcatcctagtacaagtcttatctctac---ccaagttat |
306 |
Q |
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| T |
15816951 |
ccctagctggaaacgaccgctgaaattgggtgaagatttcagaccattaacaacattgtcatcatcctagtacaagtcttgtctatacgtcccaagttat |
15817050 |
T |
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| Q |
307 |
tccctttgataattttccatgtgaagtgtcctagtcttatcctttgggaatctcatattccttgtcctttctagtattgctaaccattggtgattcatgg |
406 |
Q |
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| T |
15817051 |
tccctttgataattttccatgtgaggtgtcctagtcttatcctttgggaatctcatattccttatcctttccagtattgctaaccattggtgattcatgg |
15817150 |
T |
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| Q |
407 |
agcttcgtttgcaagtatcactattgatagacccacgtttt |
447 |
Q |
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| T |
15817151 |
agcttcgtttgcaagtatcactattgatggacccacgtttt |
15817191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 15833264 - 15833463
Alignment:
| Q |
11 |
atgaatgaaaacataattgcaataattaatagaatagtttagagattacaaagcaagattacaatatatcaaggagaggagtgggctctaattgcaatac |
110 |
Q |
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| T |
15833264 |
atgaatgaaaacataattgcaataattaatagaatagtttagaaattacaaagcaagattacaatatatcaaggagaggagtgggctctaattgcagtac |
15833363 |
T |
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| Q |
111 |
tcaatcaaaatgttcctgaaatttcaatcatccacgaaccaactctcattctcatcaatggaatggataaggggttgtgaggtctcaagtggttgctaac |
210 |
Q |
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| T |
15833364 |
tcaatcaaaatgttcctgaaatttcaattatccacgaactaactctcattctcatcaatggaatggatgaggggttgtgaggtctcaagtggttgctaac |
15833463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 2994602 - 2994539
Alignment:
| Q |
12 |
tgaatgaaaacataattgcaataattaatagaatagtttagagattacaaagcaagattacaat |
75 |
Q |
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| T |
2994602 |
tgaatgaaaacataattgcaatgattaatagaatagtttagaatttacaaaggaatattacaat |
2994539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 1903146 - 1903073
Alignment:
| Q |
182 |
gggttgtgaggtctcaagtggttgctaaccctagctggaaacgaccgctgaaattgggtga-agatttcagacc |
254 |
Q |
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| T |
1903146 |
gggttctgagatcttaagtggctgctaaccctagttggaaacgaccgcttaaattggatgacaaatttcagacc |
1903073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 13817350 - 13817267
Alignment:
| Q |
10 |
gatgaatgaaaacataattgcaataattaatagaatagtttagagattacaaagcaagattacaatatatcaaggagaggagtg |
93 |
Q |
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| T |
13817350 |
gatgaatgaaaacaagattgcaataattaatttaagagtttagagtatataaaggaagattataatatgtgaaggagaagagtg |
13817267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 9813 - 9854
Alignment:
| Q |
11 |
atgaatgaaaacataattgcaataattaatagaatagtttag |
52 |
Q |
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| T |
9813 |
atgaatgaaaatgtaattgcaataattaatagaagagtttag |
9854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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