View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_3 (Length: 747)

Name: NF18243_low_3
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_3
NF18243_low_3
[»] chr5 (8 HSPs)
chr5 (341-603)||(38278986-38279248)
chr5 (652-729)||(38278824-38278899)
chr5 (458-531)||(38270557-38270629)
chr5 (490-535)||(38271828-38271873)
chr5 (497-533)||(38276955-38276991)
chr5 (458-535)||(38278042-38278120)
chr5 (463-528)||(38279481-38279547)
chr5 (230-311)||(38273944-38274025)
[»] chr8 (3 HSPs)
chr8 (451-556)||(26572729-26572831)
chr8 (243-309)||(26574026-26574092)
chr8 (226-308)||(26573813-26573895)
[»] chr3 (1 HSPs)
chr3 (278-307)||(35756369-35756398)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 341 - 603
Target Start/End: Complemental strand, 38279248 - 38278986
Alignment:
Q  341 ttggctggatcaaaattgagaaatcttagagacaatcaatttagtcccctccactttcaccctaacttataagacatttcacctatattataaacatagt 440  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||  ||||||||||||||    
T  38279248 ttggctggatcaaaattgagaaatcttagagacaatcaatttaatcccctccactttcatcataatttataagacatttcacctcgattataaacatagt 38279149  T
Q  441 atta----------tgtccaatgtagaactttaataaacccaacatgatgttcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatca 530  Q
    ||||          ||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||    
T  38279148 attatgttgtattgtgtccaatacggaactttaataaacccaacatgatgttcgtagttacttt-tgtcataaaatttgtctaa---------aaaatca 38279059  T
Q  531 tttgtcccagttatatgaatccctatgacgttggtgtattctattctaaaaataataaaagatacatgataaa 603  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38279058 tttgtcccaattatatgaatccctatgacgttggtgtattctattctaaaaataataaaagatacatgataaa 38278986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 652 - 729
Target Start/End: Complemental strand, 38278899 - 38278824
Alignment:
Q  652 gccaaagaccgtttacgaaccttcattgtgtggaacaacttgactagttaccagttcgtgatttctcaactgtctact 729  Q
    ||||||||||||||||||||||||| ||||  |||||| ||||||| |||||||||||||||||||||||||||||||    
T  38278899 gccaaagaccgtttacgaaccttcactgtg--gaacaatttgactatttaccagttcgtgatttctcaactgtctact 38278824  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 531
Target Start/End: Complemental strand, 38270629 - 38270557
Alignment:
Q  458 actttaataaacccaacatgatgttcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatcat 531  Q
    |||||| |||| |||||||||| |  ||||| |||||||||||| |||||||||| ||| ||||||||||||||    
T  38270629 actttactaaatccaacatgatata-gtagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcat 38270557  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 38271873 - 38271828
Alignment:
Q  490 actttctgtcataaaatttgtctaaaaaatcatcaaaatcatttgt 535  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  38271873 actttctgtcatgaaatttgtctcaaacatcatcaaaatcatttgt 38271828  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 533
Target Start/End: Complemental strand, 38276991 - 38276955
Alignment:
Q  497 gtcataaaatttgtctaaaaaatcatcaaaatcattt 533  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38276991 gtcataaaatttatctaaaaaatcatcaaaatcattt 38276955  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 38278120 - 38278042
Alignment:
Q  458 actttaataaacccaacatgatgt-tcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatcatttgt 535  Q
    ||||||||||| | |||||||| | | |||||||||||| | ||| |||||||||| |||  |||||||||||||||||    
T  38278120 actttaataaatcgaacatgatatatagtagttactttcagacatgaaatttgtctcaaacgtcatcaaaatcatttgt 38278042  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 528
Target Start/End: Complemental strand, 38279547 - 38279481
Alignment:
Q  463 aataaacccaacatgatgttc-gtagttactttctgtcataaaatttgtctaaaaaatcatcaaaat 528  Q
    |||||| |||||||||| | | ||| |||||||||||||| |||||||||| ||| |||||||||||    
T  38279547 aataaaaccaacatgatatgcagtaattactttctgtcatgaaatttgtctcaaacatcatcaaaat 38279481  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
Q  230 tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt 311  Q
    |||||||||||  |||| |||||| ||| ||||||||||  |||||| ||||||| || ||| ||| ||||| |||||||||    
T  38274025 tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt 38273944  T

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Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 451 - 556
Target Start/End: Complemental strand, 26572831 - 26572729
Alignment:
Q  451 atgtagaactttaataaacccaacatgatgttcgtagttactttctgtcataaaatttgtctaaaaaatcatcaaaatcatttgtcccagttatatgaat 550  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||   ||| ||||||||||    
T  26572831 atgtggaactttaataaacctaacatgatgttagtagttactttctgtcataaaatttgtctcaaaaatcatcaaaattattt---ccaattatatgaat 26572735  T
Q  551 ccctat 556  Q
    ||||||    
T  26572734 ccctat 26572729  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
Q  243 tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac 309  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26574092 tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac 26574026  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
Q  226 attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa 308  Q
    |||||||||||||||  ||||||||||||| ||||||| || || |||||||||||| | || | ||| ||||||| ||||||    
T  26573895 attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa 26573813  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 307
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
Q  278 aaacacaatttggattttataatccaaaaa 307  Q
    ||||||||||||||||||||||||||||||    
T  35756398 aaacacaatttggattttataatccaaaaa 35756369  T

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