View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_30 (Length: 460)
Name: NF18243_low_30
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 25032412 - 25031969
Alignment:
| Q |
1 |
tgagaaaataaattttatacatttaaaattatttttagctcctccaaaatggaaccaaatacacattaattattttctcaaaataaaaatgaagaattgt |
100 |
Q |
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| T |
25032412 |
tgagaaaataaattttatacatttaaaatcatttttagctcctccaaaatggaaccaaacacacattgattattttctcaaaataaaaatgatgaattgt |
25032313 |
T |
|
| Q |
101 |
ttacttgaatcaacaacagggttctgacttgggagacatgttgagaattgattacttgaatcaataaagctgtgaattatgagcagaataataaatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25032312 |
ttacttgaatcaacaacagggttctgacttgggagacatgttgagaattgattacttgaatcaataaagctgcgaattatgagcagaataataaatgttt |
25032213 |
T |
|
| Q |
201 |
atcacacaccgtacacaaacatctcttgctaattgcgatgcattgcattgcgtggtgtgttaaacaattggtacacgtatgaagcatcatctctgcaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032212 |
atcacacaccgtacacaaacatctcttgctaattgcgatgcattgcattgcgtggtgtgttaaacaattggtacacgtatgaagcatcatctctgcaaaa |
25032113 |
T |
|
| Q |
301 |
tgcagaaaacttgaaacaatcgagcaaattcattgttgttattattactttctgctacaaaattatgttgcaggtgacgcaatggtgtgtgtgagcatca |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032112 |
tgcag-aaacttgaaacaatcgagcaaattcattgttgttattattactttctgctacaaaattatgttgcaggtgacgcaatggtgtgtgtgagcatca |
25032014 |
T |
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| Q |
401 |
ttcattttatgctttcttcattcatttatccaatagatggaaagt |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25032013 |
ttcattttatgctttcttcattcatttatccaatagatggaaagt |
25031969 |
T |
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