View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_31 (Length: 453)
Name: NF18243_low_31
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 2629050 - 2628621
Alignment:
| Q |
9 |
catcttatatgaccaaattgagaaaattttcagttgattttggcggaaatcacaggtttgtggccaatgagattatttccctggactaatggtgcattaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2629050 |
catcttatatgaccaaattgagaaaattttcagttgattttggcggaaatcacaggtttgtggccaatgagattatttccctggactaatggtgcattaa |
2628951 |
T |
|
| Q |
109 |
acatcaaatattttcctattacatataccataaacataaactatccttcttaatcttctcaagttgattccccacataatgcaagtgagaaagagtaaga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2628950 |
acatcaaatattttcctattacatataccataaacataaactatccttcttaatcttctcaagttgattcctcacataatgcaagtgagaaagagtaaga |
2628851 |
T |
|
| Q |
209 |
ataaagggtttgatgataggattgagaatgagttggaaatgttggaaagcaggacaataagagaaggcgtggcaacaatataagaccatacaggacacga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2628850 |
ataaagggtttgatgataggattgagaatgagttggaaatgttggaaagcaggacaataagagaaggcgtggcaacaatataaggccatacaggacacga |
2628751 |
T |
|
| Q |
309 |
ggcacaaatgtaagaagctatgtactgtgtttggtttggccaccaccaaccaggcatcaaaaatggcaataaccttattgccaatcttctctgacattag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2628750 |
ggcacaaatgtaagaagctatgtactgtgtttggtttggccaccaccaaccaggcatcaaaaatggcaataaccttattgccaatcttctctgacattag |
2628651 |
T |
|
| Q |
409 |
tgtctgatgaggccaagacaccatattggt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2628650 |
tgtctgatgaggccaagacaccatattggt |
2628621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University