View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18243_low_35 (Length: 445)

Name: NF18243_low_35
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18243_low_35
NF18243_low_35
[»] chr2 (10 HSPs)
chr2 (127-429)||(15648961-15649263)
chr2 (190-429)||(15658206-15658448)
chr2 (206-429)||(15536966-15537189)
chr2 (190-429)||(15611322-15611564)
chr2 (190-342)||(15628491-15628649)
chr2 (206-425)||(15523889-15524108)
chr2 (190-429)||(15504325-15504564)
chr2 (18-65)||(15649319-15649366)
chr2 (373-429)||(15628404-15628460)
chr2 (24-65)||(15658557-15658598)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 127 - 429
Target Start/End: Complemental strand, 15649263 - 15648961
Alignment:
Q  127 gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattnnnnnnntatggacacaacgttcgttgaaggaagatccatttca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  15649263 gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattaaaaaaatatggacacaacgttcgttgaaggaagatccatttca 15649164  T
Q  227 aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactacagagtttggcttgtgattaaga 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15649163 aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactacagagtttggcttgtgattaaga 15649064  T
Q  327 atggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttgaaatctgaagatgaattcaatgaagaagatatcaagaacatggaacaagaagc 426  Q
    ||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15649063 atggaccaaaaattccaaaaaaattattaaatggtcgagaagtgttgaaatctgaagatgaattcaatgaagaagatatcaagaacatggaacaagaagc 15648964  T
Q  427 aaa 429  Q
    |||    
T  15648963 aaa 15648961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 190 - 429
Target Start/End: Complemental strand, 15658448 - 15658206
Alignment:
Q  190 tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata 289  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15658448 tatggacacaaccatcattgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata 15658349  T
Q  290 caatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatg---gtcgagaagtgttgaaatctgaagatg 386  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||       ||||||||||   |||||||||||||||||||||||||||    
T  15658348 caatcagttgactataaaatttggcttgtgattaagaatggaccaaaaattccgaaaaaattaataaatggtcgtcgagaagtgttgaaatctgaagatg 15658249  T
Q  387 aattcaatgaagaagatatcaagaacatggaacaagaagcaaa 429  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  15658248 aattcaatgatgaagatatcaagaacatggaacaagaagcaaa 15658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 206 - 429
Target Start/End: Complemental strand, 15537189 - 15536966
Alignment:
Q  206 gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactaca 305  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||| ||||  || | ||  |||| |||||||||||| ||| ||| |     
T  15537189 gttgaaggaagatccgtttcaaagccaccatacttcgatggtacaaatttaactgagtggagggaacctatgaagacattcatacaatctgttaacttcg 15537090  T
Q  306 gagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttgaaatctgaagatgaattcaatgaagaagatat 405  Q
     |||||||||||||||| |||||||||||||| ||||       ||||||||||||  ||||||||||||||| | ||||||||||||||| ||||||||    
T  15537089 aagtttggcttgtgattgagaatggaccaaaacttccaaaaaaattaataaatggtgaagaagtgttgaaatcggtagatgaattcaatgatgaagatat 15536990  T
Q  406 caagaacatggaacaagaagcaaa 429  Q
     ||||||||||||| |||||||||    
T  15536989 gaagaacatggaactagaagcaaa 15536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 190 - 429
Target Start/End: Complemental strand, 15611564 - 15611322
Alignment:
Q  190 tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt---acaaactgtactgaatggaaagagcgtacaaagatattc 286  Q
    ||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||   ||||| |||||||| ||||| ||||||| ||||||||||    
T  15611564 tatggacacaatgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaaattgtactgagtggaaggagcgtataaagatattc 15611465  T
Q  287 atacaatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttgaaatctgaagatg 386  Q
    |||||||| ||||||| |    ||||||||||||||||||||||||| ||||||||        ||||| |||||  |||  ||  ||||||||||||||    
T  15611464 atacaatccgttgacttcgatctttggcttgtgattaagaatggaccgaaaattccaaaaaaaataatacatggtgaagagttggagaaatctgaagatg 15611365  T
Q  387 aattcaatgaagaagatatcaagaacatggaacaagaagcaaa 429  Q
    |||||||||| |||||||  |||| |||||||| |||||||||    
T  15611364 aattcaatgatgaagataagaagatcatggaacgagaagcaaa 15611322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 342
Target Start/End: Complemental strand, 15628649 - 15628491
Alignment:
Q  190 tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt------acaaactgtactgaatggaaagagcgtacaaagata 283  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||      ||||| |||||||||||||| ||||||| |||||||    
T  15628649 tatggacacaacgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaacaaattgtactgaatggaaggagcgtataaagata 15628550  T
Q  284 ttcatacaatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattcc 342  Q
    ||||||||||| ||||||| |    | |||||||||||||||||||||||||| |||||    
T  15628549 ttcatacaatccgttgacttcgatctctggcttgtgattaagaatggaccaaatattcc 15628491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 206 - 425
Target Start/End: Complemental strand, 15524108 - 15523889
Alignment:
Q  206 gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcatacaatcagttgactaca 305  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||| ||||  || | ||  ||||||||||||||||| |||||||       
T  15524108 gttgaaggaagatccatttcaaagccaccatactttgatggtacaaatttaactgagtggagggaacttatgaagatattcatacaatctgttgactttg 15524009  T
Q  306 gagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttgaaatctgaagatgaattcaatgaagaagatat 405  Q
     ||| |||||||||||| |||||||||||||| ||||        |||||||||||  ||||||| ||||  |   ||||||||||||||| |||||||     
T  15524008 aagtatggcttgtgattgagaatggaccaaaacttccaaaaaaaataataaatggtgaagaagtgctgaagacgatagatgaattcaatgatgaagatag 15523909  T
Q  406 caagaacatggaacaagaag 425  Q
     |||| |||||||| |||||    
T  15523908 gaagatcatggaaccagaag 15523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 190 - 429
Target Start/End: Complemental strand, 15504564 - 15504325
Alignment:
Q  190 tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatattcata 289  Q
    ||||||||||||  ||  ||||||| ||||||||||||||||||||| |||||||||||  || | ||| |||||||| ||  ||| || ||||||||||    
T  15504564 tatggacacaaccatcaatgaaggacgatccatttcaaagccaccattcttcgatggtaacaattatacggaatggaaggaaagtataatgatattcata 15504465  T
Q  290 caatcagttgactacagagtttggcttgtgattaagaatggaccaaaaattccnnnnnnnttaataaatggtcgagaagtgttgaaatctgaagatgaat 389  Q
    |||||  ||||||      |||| |||||||||||||||||||||||||||||        | ||| |||||   ||| || |||||||||||||| |||    
T  15504464 caatccattgactttgatctttgtcttgtgattaagaatggaccaaaaattcccaaaacaatgatagatggtaatgaattggtgaaatctgaagatcaat 15504365  T
Q  390 tcaatgaagaagatatcaagaacatggaacaagaagcaaa 429  Q
    ||||||| |||||||  || |  |||||||||||||||||    
T  15504364 tcaatgatgaagataagaatattatggaacaagaagcaaa 15504325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 15649366 - 15649319
Alignment:
Q  18 gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15649366 gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac 15649319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 15628460 - 15628404
Alignment:
Q  373 gaaatctgaagatgaattcaatgaagaagatatcaagaacatggaacaagaagcaaa 429  Q
    |||||||||||||||||||||||  |||||||  |||||| |||||| |||||||||    
T  15628460 gaaatctgaagatgaattcaatggtgaagataagaagaacgtggaactagaagcaaa 15628404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15658598 - 15658557
Alignment:
Q  24 ggaatctttcaaattaaaaatcatattcttgagcccaacgac 65  Q
    ||||||||||  |||||||||||||||||||||| |||||||    
T  15658598 ggaatctttctcattaaaaatcatattcttgagcgcaacgac 15658557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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