View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_36 (Length: 439)
Name: NF18243_low_36
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_36 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 3448690 - 3449087
Alignment:
| Q |
16 |
taaatatgagggcattccctgtaccactggttgaagttaatttaataatcaattatataagacatgttttctcatatactatgatgtaaccaaaaactac |
115 |
Q |
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| T |
3448690 |
taaatatgagggcatgccctatac-actggttgaagttaatttaataatcaattatataagacatgttttctcatatactatgatgtaaccaaaaactac |
3448788 |
T |
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| Q |
116 |
atactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgatacctaaataacattaggatacatgtgattatgaaac |
215 |
Q |
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| T |
3448789 |
atactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgatacctaaataacattaggatacatgtgattctgaaac |
3448888 |
T |
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| Q |
216 |
ataaagagaaacggataacactacctgaactatgtgttggcttgttgttcttccaatgccttattaggctcttgttctaaaactggtgagaagacttcag |
315 |
Q |
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| T |
3448889 |
ataaagagaaacggataacactacctgaactatgtgttggcttgttgttattccaatgccttattaggctcttgttctaaaactggtgagaagacttcag |
3448988 |
T |
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| Q |
316 |
atacagtnnnnnnnccaatatgcagcaacgtgtatggtttgttttaatcaccctatatataagtgtgtgatggttaaatatgattcccatttccctcaac |
415 |
Q |
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| T |
3448989 |
atacagt-aaaaaaccaatatgcagcaacgtgtatggtttgttttaatcaccctatatataagtgtgtgatggttaaatatgattcccatttccctcaac |
3449087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 294
Target Start/End: Complemental strand, 226936 - 226760
Alignment:
| Q |
130 |
aaacttattagttaaataattatgttacaaacatcaagaataaaca-------cgatacctaaataacattaggatacatg----tgattatgaaacata |
218 |
Q |
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| T |
226936 |
aaacttaatagtcaaataattatgttacaaacgtcaagaataaacaataaacacaataccaagataacattaggatacatgagagtgattctgaaacata |
226837 |
T |
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| Q |
219 |
aagagaaacggataac-actacctgaactatgtgttggcttgttgttcttccaatgccttattaggctcttgttcta |
294 |
Q |
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| T |
226836 |
aagagagaccgataaagaatacctgaattatatgttggcctgttgatctttcaatgtctttttaagctcttgttcta |
226760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 294
Target Start/End: Original strand, 19443752 - 19443970
Alignment:
| Q |
91 |
atactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaacacgatac------cta |
184 |
Q |
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| T |
19443752 |
atactatgatgtagcaaaaatatatacactatgatgcagaaacttaatagttaaataattatgttacagacgtcaagaataaacagtaaacacaatacta |
19443851 |
T |
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| Q |
185 |
a----ataacattaggataca----tgtgattatgaaacataaagagaaacggat-aacactacctgaactatgtgttggcttgttgttcttccaatgcc |
275 |
Q |
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| T |
19443852 |
ataatataacattaggatacatgactgtggttctgaaacataaagagagatggataaagtctacctgaactatgtgttggtttgttgatttttcaatgtc |
19443951 |
T |
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| Q |
276 |
ttattaggctcttgttcta |
294 |
Q |
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| T |
19443952 |
tttttaggctcttgctcta |
19443970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 19437657 - 19437741
Alignment:
| Q |
91 |
atactatgatgtaaccaaaaactacatactatggtgtagaaacttattagttaaataattatgttacaaacatcaagaataaaca |
175 |
Q |
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| T |
19437657 |
atactatgatgtaacaaaaaaaaaaatactacgatgcataaacttaatagttaaataattatgttacaaacgtcaagaataaaca |
19437741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 34658656 - 34658571
Alignment:
| Q |
210 |
tgaaacataaagagaaacggataac-actacctgaactatgtgttggcttgttgttcttccaatgccttattaggctcttgttcta |
294 |
Q |
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| T |
34658656 |
tgaaacataaagagagatgggtaaagactacctgaactatgtgttggcttgttgatctttcggtgtctttttaggctcttgctcta |
34658571 |
T |
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