View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_38 (Length: 433)
Name: NF18243_low_38
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Complemental strand, 48877925 - 48877532
Alignment:
| Q |
10 |
aatatgtgaaatgttgtagcctcacaaccacaaccagatttggcaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
109 |
Q |
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| T |
48877925 |
aatatgtgaaatgttgtagccccacaaccgcaaccagatttgacaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
48877826 |
T |
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| Q |
110 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
209 |
Q |
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| T |
48877825 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
48877726 |
T |
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| Q |
210 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
309 |
Q |
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| T |
48877725 |
aggtgaagcaaatggtttattgcaagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattct |
48877626 |
T |
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| Q |
310 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtcccat |
403 |
Q |
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| T |
48877625 |
tttaataaaccttagtttggtttcattgtaatagattgtatgtccaaactcgtcagcagagttttctaggagataagctaatgtagtgtcccat |
48877532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 33016227 - 33016147
Alignment:
| Q |
232 |
caagctatcaaatggacttcaaagttgggtttgaataatgttatttttgaattagatgcaaaattagtggtcgattctttt |
312 |
Q |
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| T |
33016227 |
caagctatcaagtgaacatcagagttgaggttgaataatgttatttttgagttaggtgcgaaaataatggtagattttttt |
33016147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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