View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_42 (Length: 427)
Name: NF18243_low_42
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 47550828 - 47551221
Alignment:
| Q |
20 |
atcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagt |
119 |
Q |
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| T |
47550828 |
atcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagt |
47550927 |
T |
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| Q |
120 |
tgaaagtgtgcagaagaacaccgcagcaggatggaacaagataggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattct |
219 |
Q |
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| T |
47550928 |
tgaaagtgtgcagaagaacaccgcagcaggatcgaacaagatagaaacaacaaattccctgcc---gcgggtggatagctttgatcatcaactggattct |
47551024 |
T |
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| Q |
220 |
ttttgtcgtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----t |
315 |
Q |
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| T |
47551025 |
ttttgtggtgatgcaatgctgaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcct |
47551124 |
T |
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| Q |
316 |
atttgaaagttaaggccccttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcat |
413 |
Q |
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| T |
47551125 |
atttgaaagttaagg-cccttgttaatttgtttaactgggaaacttcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcat |
47551221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 227 - 413
Target Start/End: Original strand, 47538259 - 47538454
Alignment:
| Q |
227 |
gtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaa |
322 |
Q |
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| T |
47538259 |
gtgatgcaatgctaaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaa |
47538358 |
T |
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| Q |
323 |
agttaaggccc---cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcat |
413 |
Q |
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| T |
47538359 |
agttaaggccctttcttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcat |
47538454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 241 - 413
Target Start/End: Original strand, 47544830 - 47545011
Alignment:
| Q |
241 |
aagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggccc--- |
333 |
Q |
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| T |
47544830 |
aagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaaagttaaggcccttt |
47544929 |
T |
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| Q |
334 |
cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcat |
413 |
Q |
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| T |
47544930 |
cttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcat |
47545011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 332
Target Start/End: Original strand, 47529011 - 47529275
Alignment:
| Q |
61 |
atgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatggaacaaga |
160 |
Q |
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| T |
47529011 |
atgtccagtcatgatatgagaggagccaataatagatcgggaagcattatttcttcagctgaaagtgggc---agaacaccccagcaggtgggaacaaga |
47529107 |
T |
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| Q |
161 |
taggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattctttttgtcgtgatgcaatgctgaagaagaaaagtgatagaac |
260 |
Q |
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| T |
47529108 |
taggacgaacaaattccctgcc---acgggtggctagcttggaacatcttc-agagtcgaat--tcgtggtg--gtgccgaagaagacaagtgatagaat |
47529199 |
T |
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| Q |
261 |
aatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggcc |
332 |
Q |
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| T |
47529200 |
aatttgattacataatgttttcatgaacacattgttttgagacaatacttttctttcctatttgaaagttaaggcc |
47529275 |
T |
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