View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_44 (Length: 424)
Name: NF18243_low_44
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 2 - 408
Target Start/End: Complemental strand, 3879164 - 3878744
Alignment:
| Q |
2 |
catatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879164 |
catatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatca |
3879065 |
T |
|
| Q |
102 |
agaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879064 |
agaaaaccaagattaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatg |
3878965 |
T |
|
| Q |
202 |
aagttgcagcagcacgaataacagcatcaggaagtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacatgtgccatgtt |
301 |
Q |
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| T |
3878964 |
aagttgcaacagcacgaataacagcatcaggaagtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacctgtgccatgtt |
3878865 |
T |
|
| Q |
302 |
actgctc--------------tttaagttgtgggcacctgaaaaatgaataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgagg |
387 |
Q |
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| T |
3878864 |
actgctcttcaaagacatagttttaagttgtgggcacctgaaaaatgaataaaccatcactttttattttatcatcggaggtgtcagtcaaactttgagg |
3878765 |
T |
|
| Q |
388 |
catattcacctgacttgtatt |
408 |
Q |
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| T |
3878764 |
catattcacctgacttgtatt |
3878744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 3865155 - 3864801
Alignment:
| Q |
13 |
gttcaaaatacaagcttacatatgcaaaaaagcgagtatacaatttgaagcacacctccaaagatatgcttgggcagtatgatgaatcaagaaaaccaag |
112 |
Q |
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||||||||||||| |||| |||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
3865155 |
gttcaaaatacaatcttaaatatgcaaaaaata-agtatacagtttaaagcacacctccaaagatatgtttgggcagtatgatgcatcaagaaaaccaag |
3865057 |
T |
|
| Q |
113 |
attaggacaatgctgcgctatttcacgcagggtttcatcgctgacacaagaacagttacgcatgtccagcttcaccagttgagggcatgaagttgcagca |
212 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
3865056 |
attaggacaatgttgtgctatttcacgcagtgtttcatcgctgacacaagaacaattacgcatgtccagtttcactagttgagggcatgaagttgcagca |
3864957 |
T |
|
| Q |
213 |
gcacgaataacagcatcaggaagtttgttgcaagaaccaatatcaagttcatgtagaagagggcaatcaagtacaacatgtgccatgttactgctc---- |
308 |
Q |
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| T |
3864956 |
gcacgaatagcagcatcaggaagtttgtggcaagaacccatatcaagttcaagcagaagagggcaattaagcacaacttgtgccatgttactgcgcttca |
3864857 |
T |
|
| Q |
309 |
----------tttaagttgtgggcacctgaaaaatgaataaaccatcactttttat |
354 |
Q |
| |
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| T |
3864856 |
atgacatggttttaagttgcgggcacctgaaaaaagaataaaccatcactttttat |
3864801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 3864777 - 3864737
Alignment:
| Q |
368 |
gtgtcagtcaaactttgaggcatattcacctgacttgtatt |
408 |
Q |
| |
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||||| ||| || |||||||||||||||||||||||||||| |
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| T |
3864777 |
gtgtcggtcgaagtttgaggcatattcacctgacttgtatt |
3864737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 8357452 - 8357532
Alignment:
| Q |
167 |
gttacgcatgtccagcttcaccagttgagggcatgaagttgcagcagcacgaataacagcatcaggaagtttgttgcaaga |
247 |
Q |
| |
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||||| |||||||| |||||| | | ||||||||||| ||||||| | || ||| |||||| ||||||||||| |||||| |
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| T |
8357452 |
gttacacatgtccatcttcactaatagagggcatgaacttgcagccgaaccgatagcagcataaggaagtttgtggcaaga |
8357532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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