View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_46 (Length: 412)
Name: NF18243_low_46
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 4904805 - 4904420
Alignment:
| Q |
18 |
aattcctttgctgatcatggacgatagcacatgaggattgaacttgcaggtaaattttaatctattttgtcnnnnnnnggttcaccacatattgcaatgt |
117 |
Q |
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| T |
4904805 |
aattcctttgctgatcatggacgatagcacatgaggattgaacttgcaggtaaaatttaatctattttgtctttttttggtacaccacatattgcaatgt |
4904706 |
T |
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| Q |
118 |
ttttaccaaatgacttattatatcttatgctaatttctatgacttattatatcttaggattggtatttatgtacctctgaatgtgaaccttgatcattgg |
217 |
Q |
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| T |
4904705 |
ttttaccaaatgacttattatatcttatgctaattcctatgacttattatatcttaggattggtatttatgtacctctgaatgtgaaccttgatcattgg |
4904606 |
T |
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| Q |
218 |
ctattaaacaaaaatattatgggaaatatgcctgtaaaatactcaaaccataaaagttcatccaggaagcagcaatgtccaacatctataaaagaactat |
317 |
Q |
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| T |
4904605 |
ctattaaacaaaaatattatgggaaatatgcctgtaaaatactcaaaccataaaagttcatccaggaagcagcaatgtccaacatctataaaagaactat |
4904506 |
T |
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| Q |
318 |
gccatcaattttctcttgaagatcttaagaaatcaaccaataactttgatgaaactcgaaaacttggacaatcgctatacagtata |
403 |
Q |
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| T |
4904505 |
gccatcaattttctcttgaagatcttaagaaatcaagcaataactttgatgaaactcgaaaacttggacaatcactatacagtata |
4904420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 4921461 - 4921609
Alignment:
| Q |
237 |
tgggaaatatgcctgtaaaatactcaaaccataaaagttcatccaggaagcagcaatgtccaacatctataaaagaactatgccatcaattttctcttga |
336 |
Q |
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| T |
4921461 |
tgggaaatatgcttgcaaaatactcaaagcgtagaagttcgtccaagaaaca---atgttcaacatttataaaagaactatgccatgagttttctctgga |
4921557 |
T |
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| Q |
337 |
agatcttaagaaatcaaccaataactttgatgaaactcgaaaacttggacaa |
388 |
Q |
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| T |
4921558 |
cgatcttaagaaagctaccaataactttgataaaaatcgaaaaattggacaa |
4921609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 4927703 - 4927848
Alignment:
| Q |
237 |
tgggaaatatgcctgtaaaatactcaaaccataaaagttcatccaggaagcagcaatgtccaacatctataaaagaactatgccatcaattttctcttga |
336 |
Q |
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| T |
4927703 |
tgggaaatatgcttgcaaaatactcaaagcgtagaagttcgtccaagaaaca---atgttcaacatttataaatgagctatgccatgagttttctctgga |
4927799 |
T |
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| Q |
337 |
agatcttaagaaatcaaccaataactttgatgaaactcgaaaacttgga |
385 |
Q |
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| T |
4927800 |
cgagcttaagaaagctaccaataactttgatgaaaatcgaaaaattgga |
4927848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 5821797 - 5821909
Alignment:
| Q |
291 |
aatgtccaacatctataaaagaactatgccatcaattttctcttgaagatcttaagaaatcaaccaataactttgatgaaactcgaaaacttggacaatc |
390 |
Q |
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||||||||||| |||| |||| ||||| |||||||||||||||||||| |||| |||||||||||||||||| | |||| ||||||| || || |||| |
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| T |
5821797 |
aatgtccaacagttatagaagagctatgtcatcaattttctcttgaagaacttaggaaatcaaccaataacttcgctgaagatcgaaaaattagaaaatc |
5821896 |
T |
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| Q |
391 |
gctatacagtata |
403 |
Q |
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|||| ||||||| |
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| T |
5821897 |
actattcagtata |
5821909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 4908507 - 4908381
Alignment:
| Q |
237 |
tgggaaatatgcctgtaaaatactcaaaccataaaagttcatccaggaagcagcaatgtccaacatctataaaagaactatgccatcaattttctcttga |
336 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||| | |||| ||| || || |||||| |||| |||| | |||||||||||||||||| || |
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| T |
4908507 |
tgggaaatatgcttgtaaaatattcaaagcgtaaaagtccttccaagaaaca---atatccaactgttatagaagagcgatgccatcaattttctctgga |
4908411 |
T |
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| Q |
337 |
agatcttaagaaatcaaccaataactttga |
366 |
Q |
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| T |
4908410 |
tgatcttaagaaatctactaataactttga |
4908381 |
T |
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