View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_5 (Length: 710)
Name: NF18243_low_5
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 15 - 696
Target Start/End: Complemental strand, 42325651 - 42324956
Alignment:
| Q |
15 |
aatatgcagtggaataatggtacagtacctgaatagagacagttgtttgctgatcctggtaggtggtaaacacctgggattttttggtggggataacagt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325651 |
aatatgcagtggaataatggtacagtacctgaatagagacagttgtttgctgatcctggtaggtggtaaacacctgggattttttggtggggataacagt |
42325552 |
T |
|
| Q |
115 |
gtttctaggaatcaactttgtcatcactcctccaacagtttcaattccaagggtaagaggtgcaacatccaagagaaggatatctggatacggagaatgg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42325551 |
gtttctaggaatcaactttgtcatcactcctccaacagtttcaattccaagggtaagaggtgcaacatccaagagaaggatatctggatacggagaatag |
42325452 |
T |
|
| Q |
215 |
aacaaccatgagaaagtgtaatacttggaaatctacatgcatcaataacaaataatagctaactaatgcaattgaagg-------------atatct-gg |
300 |
Q |
| |
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|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| | |||| || |
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| T |
42325451 |
aacaacaatgagaaagtgtaatacttggaaatcaaaatgcatcaataacaaataatagcaaactaatgcaattgaaaggctagagtataaaatataaagg |
42325352 |
T |
|
| Q |
301 |
taccttttgtttcttcaccaccctccccactcaaaatgcttccttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctc |
400 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325351 |
tacctttagtttctacaccaccctccccactcaaaatgcttccttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctc |
42325252 |
T |
|
| Q |
401 |
ctttccatcaaagtaatccttcaaaagttgttgtacctttggaatccttgtgcttccaccaacaagaacaatctcatcaatttgattcttctgtaatcca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325251 |
ctttccatcaaagtaatccttcaaaagttgttgtacctttggaatccttgtgcttccaccaacaagaacaatctcatcaatttgattcttctgtaatcca |
42325152 |
T |
|
| Q |
501 |
gcatcgtccattgccttcttcacaggtcccattgtcttccggaacaagtcattgttcaactcttcaaatcgagcacgggtaagtggctcagagaaatcaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325151 |
gcatcgtccattgccttcttcacaggtcccattgtcttccggaacaagtcattgttcaactcttcaaatcgagcacgggtaagtggctcagagaaatcaa |
42325052 |
T |
|
| Q |
601 |
caccatcaaaaagtgactcaatttccacacggacttggtgctggctactaagagctctcttggcacgctcactctccctcctcagctttccaagtg |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325051 |
caccatcaaaaagtgactcaatttccacacggacttggtgctggctactaagagctctcttggcacgctcactctccctcctcagctttccaagtg |
42324956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Complemental strand, 42273529 - 42272837
Alignment:
| Q |
18 |
atgcagtggaataatggtacagtacctgaatagagacagttgtttgctgatcctggtaggtggtaaacacctgggattttttggtggggataacagtgtt |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42273529 |
atgcagtggaaaaatggtacagtacctgaatggagacggttgtctgctgatcctggtaggtggtaaacacctgggattttttggtggggataacagtgtt |
42273430 |
T |
|
| Q |
118 |
tctaggaatcaactttgtcatcactcctccaacagtttcaattccaagggtaagaggtgcaacatccaagagaaggatatctggatacggagaatggaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
42273429 |
tctaggaatcaactttgtcatcactcctccaacagtttcaattccaagggtaagaggtgcgacatccaagagaaggatatctggatacggagaatagaac |
42273330 |
T |
|
| Q |
218 |
aaccatgagaaagtgtaatacttggaaatctacatgcatcaataacaaataatagctaactaatgcaattgaagg-------------atatct-ggtac |
303 |
Q |
| |
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||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| | |||| ||||| |
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| T |
42273329 |
aacaatgagaaagtgtaatacttggaaatcaaaatgcatcaataacaaataatagcaaactaatgcaattgaaaggctagagtataaaatataaaggtac |
42273230 |
T |
|
| Q |
304 |
cttttgtttcttcaccaccctccccactcaaaatgcttccttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctt |
403 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42273229 |
ctttagtttctacaccaccctccccactcaaaatgcttccttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctt |
42273130 |
T |
|
| Q |
404 |
tccatcaaagtaatccttcaaaagttgttgtacctttggaatccttgtgcttccaccaacaagaacaatctcatcaatttgattcttctgtaatccagca |
503 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42273129 |
tccatcaaagtaatccttcaagagttgttgtacctttggaatccttgtgcttccaccaacaagaacaatctcatcaatttgattcttctgtaatccagca |
42273030 |
T |
|
| Q |
504 |
tcgtccattgccttcttcacaggtcccattgtcttccggaacaagtcattgttcaactcttcaaatcgagcacgggtaagtggctcagagaaatcaacac |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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|
| T |
42273029 |
tcgtccattgccttcttcacaggtcccattgtcttccggaacaagtcattgttcaactcttcaaatcgagctcgggtaagtggctcagagaaatcaacgc |
42272930 |
T |
|
| Q |
604 |
catcaaaaagtgactcaatttccacacggacttggtgctggctactaagagctctcttggcacgctcactctccctcctcagctttccaagtg |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42272929 |
catcaaaaagtgactcaatttccacacggacttgatgctggctactaagagctctcttggcgcgctcactctccctcctcagctttccaagtg |
42272837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 23588188 - 23588114
Alignment:
| Q |
397 |
gctcctttccatcaaagtaatccttcaaaagttgttgtacctttggaatccttgtgcttccaccaacaagaacaa |
471 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||||| ||||| |||||||| ||| ||||||||||||||||| |
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|
| T |
23588188 |
gctcctttccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtggatccaccaacaagaacaa |
23588114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 17648496 - 17648442
Alignment:
| Q |
397 |
gctcctttccatcaaagtaatccttcaaaagttgttgtacctttggaatccttgt |
451 |
Q |
| |
|
|||||||||| |||||| |||||| ||| |||||||| ||||||||||| ||||| |
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|
| T |
17648496 |
gctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttgt |
17648442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 445
Target Start/End: Original strand, 39985310 - 39985407
Alignment:
| Q |
348 |
acagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctttccatcaaagtaatccttcaaaagttgttgtacctttggaat |
445 |
Q |
| |
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|||||||||||| | ||||| || |||||||| || | || |||| | |||||||||| | |||| |||| | |||||||||||| ||||||||||| |
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| T |
39985310 |
acagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcctttccgttaaagaaatcttgcaaaagttgttgaacctttggaat |
39985407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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