View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_54 (Length: 395)
Name: NF18243_low_54
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 51988136 - 51987767
Alignment:
| Q |
20 |
ctaagcctttgctttagctcttcagaaacactatcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51988136 |
ctaagcctttgctttagctcttcagaaacactatcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaa |
51988037 |
T |
|
| Q |
120 |
cactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51988036 |
cactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttc |
51987937 |
T |
|
| Q |
220 |
tggaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttcatgttccatatcatcattctcttcgttcaccgaaacagtgtggcgc |
319 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51987936 |
ttgaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttcatgttccatatcatcattctcttcgttcaccgaaacagtgtggcgc |
51987837 |
T |
|
| Q |
320 |
tgcatattcctttgcaatttctctgttaattcgcatgtgcctatctctttgaattgaggcattcctatga |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51987836 |
tgcatattcctttgcaatttctctgttaattcgcatgtgcctatctcttcgaattgaggcattcctatga |
51987767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 52011362 - 52011610
Alignment:
| Q |
20 |
ctaagcctttgctttagctcttcagaaacactatcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaa |
119 |
Q |
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||||||||||| || ||||| || ||||||| |||||||||| | || ||||||||||||| |||||||| ||||| ||| ||||||||| ||||||| |
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| T |
52011362 |
ctaagcctttgtttgagctcatccgaaacaccatcaagcgaaaccattccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaa |
52011461 |
T |
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| Q |
120 |
cactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttc |
219 |
Q |
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| ||||| ||| | | ||||||||||| | || ||| | | |||||||| ||||| | ||||| |||||||||| ||||||| || |||| ||| |
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| T |
52011462 |
ccctaaacctttccctcaccaaatcttctccgtttcttttcggaacccaaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttc |
52011561 |
T |
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| Q |
220 |
tggaatagctttaattgctttagagaaaggtgttggagaaccatcatca |
268 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
52011562 |
ctgaatagctttgattgcttcagagaaaggtgttggagaagcatcatca |
52011610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 52001497 - 52001767
Alignment:
| Q |
20 |
ctaagcctttgctttagctcttcagaaacactatcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaa |
119 |
Q |
| |
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||||||||||| ||||| | |||||||||| |||||||||||||| ||||| |||| || |||||||| ||||| ||| |||| ||| |||||||| |
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| T |
52001497 |
ctaagcctttgttttagtgcatcagaaacaccatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaa |
52001596 |
T |
|
| Q |
120 |
cactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttc |
219 |
Q |
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||| || |||| | | | |||||||| |||| | ||||||| |||| |||| |||||||| |||| ||| |||| ||||||| | |||| ||| |
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| T |
52001597 |
cacataatcttcccctcacaaaatcttcaccattcagttttgaaacccaagtaagggattcatcgacaaacccccttttgttgcttttagtaattcgttc |
52001696 |
T |
|
| Q |
220 |
tggaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttcatgttccatatcatcat |
290 |
Q |
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| |||||||||| | ||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||| |
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| T |
52001697 |
ttgaatagctttgactgctttagagaaaggagttggagaatcatcatcaacttcatgttccacatcatcat |
52001767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 274
Target Start/End: Original strand, 11749250 - 11749425
Alignment:
| Q |
99 |
acaattcttgcaatgaaggaacactaaagcttctcttttccaaatcttcttcattgaattttgaatgccaaataagagattcatcaacaagccctttttt |
198 |
Q |
| |
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||||||||| |||||||||||||| ||| ||||| || ||||||||||| |||| ||| | | ||||||||| ||||||||||||| ||| |||| |
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| T |
11749250 |
acaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacccaaataagggattcatcaacaaaccccatttt |
11749349 |
T |
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| Q |
199 |
catgcttttggcgattctttctggaatagctttaattgctttagagaaaggtgttggagaaccatcatcagtttca |
274 |
Q |
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| || ||||||| |||| |||| |||||||||| |||| || |||||||| |||||||||||||||||| ||||| |
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| T |
11749350 |
cttggttttggcaattcgttcttgaatagctttgattgtttcggagaaaggagttggagaaccatcatcaatttca |
11749425 |
T |
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