View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_55 (Length: 391)
Name: NF18243_low_55
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 52076822 - 52077063
Alignment:
| Q |
131 |
tgctagaattgattgaatacttcacttaaatctcaaattttcatctataaacatcactagaacaattgttgatccattcaaaattgcatatctaacataa |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52076822 |
tgctagaattgattgaatacttcacttaaatctcaaattttcatctataaacatcactagaacaattgttgatccattcgaaattgcatatctaacataa |
52076921 |
T |
|
| Q |
231 |
attcaaaaccattttatgaacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaacaacctacaattcagattcaac |
330 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
52076922 |
attcaaaaccattttatgaacaacaccattaattattctccatcagaatccattgttcctcatccctaccaacaacaacaacctaaaatccagattcaac |
52077021 |
T |
|
| Q |
331 |
ccatcaaaacattaacaacaatagggaagagatttgcatctc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077022 |
ccatcaaaacattaacaacaatagggaagagatttgcatctc |
52077063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 3615430 - 3615771
Alignment:
| Q |
10 |
catcatcacctaactttttcacatttattcatatccttcaatcttcctcttcttgatctccatcaacctcatcattatgttcatataaacccaannnnnn |
109 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
3615430 |
catcatcacctaactttttcacctttattcatctccttcaatcttcctcttcttgatctttatcatcttcatcattatgttcatataaacccagattttt |
3615529 |
T |
|
| Q |
110 |
nnaatagacagaccnnnnnnn-tgctagaattgattgaatacttcacttaaatctcaaattttcatctataaacatcactagaacaattgttgatccatt |
208 |
Q |
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| T |
3615530 |
ttaacagtcagaccaaaaaaaatgctagaattgattgaatacttcgcttaaatctcaaattttcatctataaacatcactagaacaactgcagatccatt |
3615629 |
T |
|
| Q |
209 |
caaaattgcatatctaacataaattcaaaaccattttatgaacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaa |
308 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3615630 |
cgaaattgcatatctaacaaaaattcaaaaccattttatgaacaacaccattaattattctccatcagaacccattgtttctcatccctaccaacaacaa |
3615729 |
T |
|
| Q |
309 |
caacctacaattcagattcaacccatcaaaacattaacaaca |
350 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3615730 |
caacctaaaattcagattcaacccatcaaaacattaacaaca |
3615771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 52076725 - 52076770
Alignment:
| Q |
10 |
catcatcacctaactttttcacatttattcatatccttcaatcttc |
55 |
Q |
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|
| T |
52076725 |
catcatcacctaactttttcacatttattcatctccttcaatcttc |
52076770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 3615768 - 3615802
Alignment:
| Q |
338 |
aacattaacaacaatagggaagagatttgcatctc |
372 |
Q |
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| T |
3615768 |
aacattaacaacaatagggaagagatttgcatctc |
3615802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 48494100 - 48494061
Alignment:
| Q |
131 |
tgctagaattgattgaatacttcacttaaatctcaaattt |
170 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||| |
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| T |
48494100 |
tgctagaattgatcgaatccttcacttaaatctcaaattt |
48494061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 43 - 372
Target Start/End: Complemental strand, 16757402 - 16757075
Alignment:
| Q |
43 |
tccttcaatctt-cctcttcttgatctccatcaacctcatcattatgttcatataaacccaannnnnnnnaatagacagaccnnnnnnntgctagaattg |
141 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | ||||||||||||||| |||||||| || || |||||| ||||||||||| |
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| T |
16757402 |
tccttcaatctttcctcttcttgatcttcatcatcttcatcattatgttcacataaaccctgatttttttaacagtcagaccaaaaaaatgctagaattg |
16757303 |
T |
|
| Q |
142 |
attgaatacttcacttaaatctcaaattttcatctataaacatcactagaacaattgttgatccattcaaaattgcatatctaacataaattcaaaacca |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16757302 |
attgaatacttcacttaaatctcaaattttcatctataaacatcactagaacaattgcagatccattcgaaattgcatatctaacataaattcaaaacca |
16757203 |
T |
|
| Q |
242 |
ttttatgaacaataccattaattattctccatcagaatccattgttcgtcatccctaccaacaacaacaacctacaattcagattcaacccatcaaaaca |
341 |
Q |
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|||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||||||| |
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| T |
16757202 |
ttttatgaacaacaccattaattattctccatcaaaacccattgttcctcatccctaccaa---caaccacctaaaatccagattcaacccatcaaaaca |
16757106 |
T |
|
| Q |
342 |
ttaacaacaatagggaagagatttgcatctc |
372 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |
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|
| T |
16757105 |
ttaacaacaataaggaagagatttacatctc |
16757075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 44553511 - 44553550
Alignment:
| Q |
131 |
tgctagaattgattgaatacttcacttaaatctcaaattt |
170 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
44553511 |
tgctagaattgattgaatccttcacttaaatctcaaattt |
44553550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 42368195 - 42368135
Alignment:
| Q |
43 |
tccttcaatcttcctcttcttgatctccatcaacctcatcattatgttcatataaacccaa |
103 |
Q |
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||||||||| ||| || ||||||||| ||||| | | | |||||||||||||||||||||| |
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|
| T |
42368195 |
tccttcaatattcttcctcttgatcttcatcatcttaaacattatgttcatataaacccaa |
42368135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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