View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_57 (Length: 385)
Name: NF18243_low_57
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 48585796 - 48585440
Alignment:
| Q |
14 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48585796 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatga |
48585697 |
T |
|
| Q |
114 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48585696 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaat |
48585597 |
T |
|
| Q |
214 |
catgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585596 |
catgctgatttaaacaaaccattttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
48585497 |
T |
|
| Q |
314 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48585496 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaa |
48585440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 48640369 - 48640013
Alignment:
| Q |
14 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
48640369 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacga |
48640270 |
T |
|
| Q |
114 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaat |
213 |
Q |
| |
|
|||||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || |||||| |
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| T |
48640269 |
tggtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaat |
48640170 |
T |
|
| Q |
214 |
catgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
313 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
48640169 |
catgccgattcaaacaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgt |
48640070 |
T |
|
| Q |
314 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48640069 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaa |
48640013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 48661841 - 48661667
Alignment:
| Q |
194 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
293 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
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| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
294 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaatt |
368 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| |
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| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaatt |
48661667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 194 - 366
Target Start/End: Original strand, 48618046 - 48618218
Alignment:
| Q |
194 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
293 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
294 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaa |
366 |
Q |
| |
|
||||||||||| ||| | ||||| | | || |||||||||| | |||||||||||||| |||||||| |
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|
| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaa |
48618218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 194 - 366
Target Start/End: Complemental strand, 48629155 - 48628983
Alignment:
| Q |
194 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
293 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
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|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
294 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaa |
366 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaa |
48628983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 368
Target Start/End: Complemental strand, 48667438 - 48667262
Alignment:
| Q |
192 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
291 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
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|
| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
292 |
cacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaatt |
368 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| |||||||||||||| || |||| | |||||||||||||| |
|
|
| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaatt |
48667262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 366
Target Start/End: Complemental strand, 48653409 - 48653237
Alignment:
| Q |
194 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
293 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
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|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
294 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaa |
366 |
Q |
| |
|
||||||||||||||||| |||| | | ||| | |||||| | ||| ||||||| |||||| |||||||| |
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|
| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaa |
48653237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 318
Target Start/End: Complemental strand, 11547518 - 11547396
Alignment:
| Q |
196 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
295 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
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|
| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
296 |
atattccttctgttttatcatgg |
318 |
Q |
| |
|
||||||||||||||||| |||| |
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|
| T |
11547418 |
gtattccttctgttttattatgg |
11547396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 48653558 - 48653483
Alignment:
| Q |
45 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
120 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||| | || |||| ||||||||||||||| ||||| |
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|
| T |
48653558 |
taacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta |
48653483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 48661958 - 48661896
Alignment:
| Q |
59 |
acaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
121 |
Q |
| |
|
|||||||||||||||| || ||||||||| || || |||||||||||||||| || |||||| |
|
|
| T |
48661958 |
acaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatagtttac |
48661896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
| Q |
194 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
293 |
Q |
| |
|
|||||||||| || ||||||||| ||| | ||||||||| |||| || |||||||||||| ||||||||||||||||| ||| | |||| |
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|
| T |
19665402 |
tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca |
19665501 |
T |
|
| Q |
294 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactat |
357 |
Q |
| |
|
|||||||||||| ||| | ||||| | | ||| ||||||||||||| |||||||||||||| |
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|
| T |
19665502 |
tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat |
19665565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 19665230 - 19665328
Alignment:
| Q |
22 |
gctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
120 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||| | |||||| | |||||||| ||||||||| || || |||| | |||||||||||||||||| |
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|
| T |
19665230 |
gctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatggttta |
19665328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 366
Target Start/End: Complemental strand, 27228385 - 27228284
Alignment:
| Q |
265 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
364 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| ||||| | | |||| |||||||||| | |||||||||||||| | |||| |
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|
| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
365 |
aa |
366 |
Q |
| |
|
|| |
|
|
| T |
27228285 |
aa |
27228284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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