View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18243_low_58 (Length: 385)
Name: NF18243_low_58
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 91 - 367
Target Start/End: Original strand, 43568473 - 43568755
Alignment:
| Q |
91 |
ctatcagcatcatcatctccaattcaaacccaagacaacaagaatcactttcccttacaaaccaaaatgccaa------caacaaaaacaacccaaatcc |
184 |
Q |
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| T |
43568473 |
ctatcagcatcatcatctccaattcaaaccgaagacaacaagaatcactttcccttacaaaccaaaatgccaacaccaacaacaaaaacaacccaaatcc |
43568572 |
T |
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| Q |
185 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
284 |
Q |
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| T |
43568573 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactacatccgtgttctagaagtttctagaaaagccgacc |
43568672 |
T |
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| Q |
285 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttctttccttttcaaaaccctaaca |
367 |
Q |
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| T |
43568673 |
acccattccgcggttcccgccttctcctccttgataatcctggaaacatccacagcatttccttcctattcaaaaccctaaca |
43568755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 43568407 - 43568437
Alignment:
| Q |
19 |
aagaatgtggatggtcctatctccctctctt |
49 |
Q |
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| T |
43568407 |
aagaatgtggatggtcctatctccctctctt |
43568437 |
T |
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