View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18243_low_6 (Length: 652)
Name: NF18243_low_6
Description: NF18243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18243_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Complemental strand, 24515261 - 24514636
Alignment:
| Q |
12 |
aagaagagcaaacaggttttaattaacttaattttctttgctattatttggtatgtaatgtagatattaattgtgataaataattttgtgacatgcttga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24515261 |
aagaagagcaaacaggttttaattaacttaattttctttgctattatttggtatgtaatgtagatattaattgtgataaataattttgtgacatgcttga |
24515162 |
T |
|
| Q |
112 |
aaatatcaaggatggtagggaagaaaacaagaacacgatgaaaaaacgtcgccgtcaggttttattcagtggaattattacagccataggtatgtgtact |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24515161 |
aaatatcaaggttggtagggaagaaaacaagaacacgatgaaaaaacgtcgccgtcaggttttattcagtggaattattacagccataggtatgagtact |
24515062 |
T |
|
| Q |
212 |
ttccatcaaagggtggaggaatttacttgattcagtaataatttctttaaggttcaatttaaaattttcaatttggatttttcctaggtataagtttaca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24515061 |
ttccatcaaagggtggaggaatttacttgattcagtattaatttctttaaggttcaatttaaaattttcaatttggttttttcctaggtataagtttaca |
24514962 |
T |
|
| Q |
312 |
taattttccagaaggaatggcagtgtatcttggatccatgaaggtatatacttcttctgtcaaaaataaataaataataattaaggtggttacattacat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24514961 |
taattttccagaaggaatggcagtgtatcttggatccatgaaggtatatacttcttctgtcaaaaataaataaa---taattaaggtggttacattacat |
24514865 |
T |
|
| Q |
412 |
gtaactaatgtttatgttgttacatcaatttgatgaatgtgtcacg--nnnnnnnnaatagggtcttcgtgttggtcttaaccttgcattggcaattgct |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24514864 |
gtaactaatgtttatgttgttacatcaatttgatgaatgtgtcacgttttttttttaatagggtcttcgtgttggtcttaaccttgcattggcaattgct |
24514765 |
T |
|
| Q |
510 |
ctgcacaatatccctgaggtataaattttgaaaccgaagcagtttagacatgagactgtaattttatttggtgttataatcaatgagggaaaatcataga |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24514764 |
ctgcacaatatccctgaggtataaattttgaaaccgaagcagtttagacatgagactgtaattttatttggtgttataatcaatgagggaaaatcataga |
24514665 |
T |
|
| Q |
610 |
tctttataaaatttgatgccatgtctttg |
638 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24514664 |
tctttataaaatttgatgccatgtctttg |
24514636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 41948574 - 41948507
Alignment:
| Q |
291 |
tttcctaggtataagtttacataattttccagaaggaatggcagtgtatcttggatccatgaaggtat |
358 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41948574 |
tttcttaggcataagtttacacaattttccagaaggaatggcagtgtttcttggatccatgaaggtat |
41948507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University